Factsheet for Zm00001d014030_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	mitochondrion, peroxisome, secretory
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04410.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	64.42	91.78
EER94077	Sorghum	peroxisome	95.51	89.76
Zm00001d032695_P001	Maize	plasma membrane	95.19	89.46
Os10t0478200-01	Rice	extracellular	91.03	85.54
TraesCS1D01G153900.1	Wheat	golgi, plastid	90.71	84.98
Solyc09g090140.2.1	Tomato	plastid	90.38	84.94
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	90.06	84.64
PGSC0003DMT400044217	Potato	cytosol	90.06	84.64
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	90.06	84.64
TraesCS1B01G172400.1	Wheat	golgi	90.06	84.38
VIT_07s0005g03360.t01	Wine grape	extracellular	89.74	84.34
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	89.74	84.34
HORVU1Hr1G041250.5	Barley	extracellular	89.74	84.08
CDY43609	Canola	peroxisome	89.42	84.04
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	89.42	84.04
CDY32953	Canola	peroxisome	89.1	83.73
Bra027485.1-P	Field mustard	peroxisome	89.1	83.73
CDX89826	Canola	peroxisome	88.78	83.43
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	88.78	83.43
AT1G04410.1	Thale cress	peroxisome	88.78	83.43
KRH69119	Soybean	mitochondrion, nucleus	88.46	83.13
GSMUA_Achr5P03900_001	Banana	plasma membrane	88.46	83.13
CDY18230	Canola	peroxisome	88.46	83.13
KRH31702	Soybean	endoplasmic reticulum	87.18	82.93
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	87.18	82.93
Bra015314.1-P	Field mustard	peroxisome	87.5	82.23
VIT_07s0005g03350.t01	Wine grape	plastid	89.74	76.71
Zm00001d019330_P001	Maize	cytosol	67.31	55.41
Zm00001d002741_P001	Maize	mitochondrion, peroxisome, plastid, vacuole	68.59	54.87
Zm00001d031899_P002	Maize	plastid	41.67	30.09

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	UniProt:A0A1D6GPH0
ProteinID:AQK65069.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH
InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382
PANTHER:PTHR23382:SF7	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI000844435D
EnsemblPlantsGene:Zm00001d014030	EnsemblPlants:Zm00001d014030_P001	EnsemblPlants:Zm00001d014030_T001	SEG:seg	:	:

Description

Malate dehydrogenase cytoplasmic 1

Coordinates

chr5:-:29404683..29410087

Molecular Weight (calculated)

33259.4 Da

IEP (calculated)

7.501

GRAVY (calculated)

0.160

Length

312 amino acids

Sequence
(BLAST)

001: MAKEPMRVLV TGAAGQIGYA LVPMIARGVM LGADQPVILH MLDIPPAAEA LNGVKMELVD AAFPLLKGVV ATTDVVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KTQASALEAH AAPNCKVLVV ANPANTNALI LKEFAPSIPD RNVTCLTRLD HNRALGQISE RLSVQVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSTGEKPV RELVADDEWL NGEFITTVQQ RGAAIIKARK FSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYGV PSGLIYSFPV TCSGGEWKIV
301: QGMIVVVLKV KT

Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.