Factsheet for Zm00001d019330_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26853	Sorghum	mitochondrion	72.56	77.68
Zm00001d002741_P001	Maize	mitochondrion, peroxisome, plastid, vacuole	75.73	73.59
Os04t0551200-01	Rice	mitochondrion, plasma membrane, plastid	65.17	70.17
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	55.41	67.31
Zm00001d032695_P001	Maize	plasma membrane	55.67	63.55
Zm00001d031899_P002	Maize	plastid	33.25	29.17

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	UniProt:A0A1D6HWW8
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616
GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C
InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf
ProteinID:ONM52713.1	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382
PANTHER:PTHR23382:SF8	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI0008DB3437
EnsemblPlantsGene:Zm00001d019330	EnsemblPlants:Zm00001d019330_P001	EnsemblPlants:Zm00001d019330_T001	SEG:seg	:	:

Description

Malate dehydrogenase cytoplasmic 1

Coordinates

chr7:+:28121896..28123724

Molecular Weight (calculated)

41844.0 Da

IEP (calculated)

6.054

GRAVY (calculated)

-0.184

Length

379 amino acids

Sequence
(BLAST)

001: MEMMYTDIAQ ALEANGIEAN LNDYLTFFCL GNREVKQEGE YEPEEHPEPD TDYIWGSRGQ IGYAIVAMIA RGLMLGPDQP VVLHMLDLPK SADALSGVRM
101: ELIDAALPLL RGVVATSDEA EAFRGVSFAV LIGGWPRKEG MQRKDLIAKN VPIYQSQASA LQQHAAPNCK VLVVANPANM NALVLKELAP SVPAKNITCL
201: TRLDHNRALG QISEKLGVHV DDVRNAIVWG NHSSTQFPDA SHATARTQHG EKTVRELIAD EKWFKEEFVS VVQQRGEAVI KARKQSSSLS AASAACDHMR
301: DWILGTPKGT WVSMGVCSDG SYGVPKGIFY SFPVTCEKGE WSILQGEFLS LYQYSRFCRT LSREGCYCRC FLQSPYSCS

Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.