CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 5
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0551200-01	Rice	mitochondrion, plasma membrane, plastid	82.77	83.24
Zm00001d002741_P001	Maize	mitochondrion, peroxisome, plastid, vacuole	85.03	77.18
Zm00001d019330_P001	Maize	cytosol	77.68	72.56
EER94077	Sorghum	peroxisome	66.1	70.48
EES15165	Sorghum	plastid	38.98	32.17
KXG25370	Sorghum	plastid	38.7	31.49

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	UniProt:A0A1B6PMH4
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616
GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	EnsemblPlants:KXG26853	ProteinID:KXG26853
ProteinID:KXG26853.1	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS
InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF8	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561
MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383
EnsemblPlantsGene:SORBI_3006G170800	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI00081AC281
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:52734301..52736982

Molecular Weight (calculated)

38655.6 Da

IEP (calculated)

6.944

GRAVY (calculated)

-0.090

Length

354 amino acids

Sequence
(BLAST)

001: MMLPNSLLQR LASWCPWLLR DERKQPVKVL VTGAAGQIGY AIVAMIARGL MLGPDQPVVL HMLDLPKSAE TLNGVRMELI DAALPLLRGV VATSDEAEAF
101: RGVNFAVLIG GSPRREGMQR KDLIAKNVPI YQSQASALQQ HAAPNCKVLV VANPANTNAL VLKEFAPAVP AKNITCLTRL DHNRALGQIS EKLGVHVADV
201: RNAIVWGNHS STQFPDARHA TARTQHGEKP VVELVADEKW LKEEFVSVVQ QRGEAVIKAR KQSSSLSAAS AACDHMRDWI LGTPKGTWVS MGVYSDGSYG
301: VPEGIFYSFP VTCDKGEWSI VQGLEVDDFA RSKMELSANE LDEERSMAYE FVSS

Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.