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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane, plastid

Predictor Summary:
  • cytosol 1
  • plastid 2
  • mitochondrion 7
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 plastid: 21433289
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG26853 Sorghum mitochondrion 83.24 82.77
Os10t0478200-01 Rice extracellular 69.32 73.49
Zm00001d002741_P001 Maize mitochondrion, peroxisome, plastid, vacuole 77.56 70.0
Zm00001d019330_P001 Maize cytosol 70.17 65.17
Os08t0562100-01 Rice plastid 40.34 32.79
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37MapMan:1.4.2Gene3D:3.40.50.720Gene3D:3.90.110.10EntrezGene:4336595MapMan:5.1.1.3
ProteinID:BAF15409.1ProteinID:BAS90380.1ProteinID:CAE01681.2ProteinID:EEE61453.1GO:GO:0003674GO:GO:0003824
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005975GO:GO:0006091
GO:GO:0006099GO:GO:0006107GO:GO:0006108GO:GO:0006139GO:GO:0006734GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016491GO:GO:0016615GO:GO:0016616GO:GO:0019752
GO:GO:0030060GO:GO:0055114InterPro:IPR015955InterPro:L-lactate/malate_DHInterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_CInterPro:Malate_DH_ASInterPro:Malate_DH_NAD-dep_eukInterPro:Malate_DH_type2InterPro:NAD(P)-bd_dom_sfEnsemblPlantsGene:Os04g0551200
EnsemblPlants:Os04t0551200-01PFAM:PF00056PFAM:PF02866PIRSF:PIRSF000102ScanProsite:PS00068PANTHER:PTHR23382
PANTHER:PTHR23382:SF8UniProt:Q7FAT9SUPFAM:SSF51735SUPFAM:SSF56327TIGRFAMs:TIGR01758TIGRFAMs:TIGR01759
UniParc:UPI000021C6FARefSeq:XP_015634484.1SEG:seg:::
Description
Similar to Cytoplasmic malate dehydrogenase. (Os04t0551200-01)
Coordinates
chr4:+:27605166..27608318
Molecular Weight (calculated)
38299.2 Da
IEP (calculated)
7.221
GRAVY (calculated)
-0.024
Length
352 amino acids
Sequence
(BLAST)
001: MMSSNSLFQR LAKWCPWLLR DEPKKPVKVL VTGAAGQIGY AIVAMIARGL MLGADQPVVL HLLDLPVAAN ALNGVRMELI DAALPLLRGV VATSDEAEAF
101: KGVNVAIVIG GWPRRDGMER KDLISKNVTI YKSQASALHQ HAAPNCKVLV VANPANTNAL VLKEFAPAIP AKNITCLTRL DHNRALGQVA EKLNVHVGDV
201: KNAIIWGNHS STQFPDASHA TVSTDRGERP VRELIADEIW LREEFVTDVQ QRGAAVIKAR KQSSSLSAAS AACDHMRDWI LGTPKGTWVS MGVYSDGSYG
301: VPEGVFFSFP VTCEKGEWSV VQGLEIDDFA RSKMETSATE LKEEKSIAYE FL
Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)
001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS
Arabidopsis Description
MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.