Factsheet for Bra015314.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04410.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89826	Canola	peroxisome	98.8	98.8
CDY18230	Canola	peroxisome	98.49	98.49
Bra027485.1-P	Field mustard	peroxisome	95.18	95.18
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	95.18	95.18
AT1G04410.1	Thale cress	peroxisome	94.88	94.88
Solyc09g090140.2.1	Tomato	plastid	91.87	91.87
PGSC0003DMT400044217	Potato	cytosol	91.57	91.57
Zm00001d032695_P001	Maize	plasma membrane	90.06	90.06
EER94077	Sorghum	peroxisome	89.46	89.46
TraesCS1D01G153900.1	Wheat	golgi, plastid	89.16	88.89
KRH69119	Soybean	mitochondrion, nucleus	88.86	88.86
KRH31702	Soybean	endoplasmic reticulum	87.65	88.72
HORVU1Hr1G041250.5	Barley	extracellular	88.86	88.59
VIT_07s0005g03360.t01	Wine grape	extracellular	88.55	88.55
TraesCS1B01G172400.1	Wheat	golgi	88.55	88.29
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	87.65	87.65
Os10t0478200-01	Rice	extracellular	87.65	87.65
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	82.23	87.5
GSMUA_Achr5P03900_001	Banana	plasma membrane	87.35	87.35
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	86.14	87.2
VIT_07s0005g03350.t01	Wine grape	plastid	88.55	80.55
Bra002797.1-P	Field mustard	endoplasmic reticulum	69.28	61.66
Bra002660.1-P	Field mustard	plastid	39.46	29.64
Bra006772.1-P	Field mustard	plastid	39.16	29.28
Bra020374.1-P	Field mustard	plastid	38.86	29.12

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	EnsemblPlantsGene:Bra015314
EnsemblPlants:Bra015314.1	EnsemblPlants:Bra015314.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006108
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616
GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C
InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M4DFP1	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	SUPFAM:SSF51735
SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI000254408E	SEG:seg	:

Description

AT1G04410 (E=2e-174) | malate dehydrogenase, cytosolic, putative

Coordinates

chrA10:+:2522871..2524698

Molecular Weight (calculated)

35481.9 Da

IEP (calculated)

5.979

GRAVY (calculated)

0.031

Length

332 amino acids

Sequence
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMTKNVSIY KSQATALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KSITCLTRLD HTGALGQISE GLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSAGEKPV RELVKNDEYL NGEFITTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYDV PAGLIYSFPV TCRNGEWSIV
301: QGLPIDEMSR KKMDLTAEEL KEEKDLAYSC LS

Best Arabidopsis Sequence Match ( AT1G04410.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178W4H0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.