Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G04410.1 | CDY32970 | AT5G42980.1 | 15352244 |
AT1G04410.1 | CDY43592 | AT5G42980.1 | 15352244 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY18230 | Canola | peroxisome | 99.7 | 99.7 |
Bra015314.1-P | Field mustard | peroxisome | 98.8 | 98.8 |
CDY15504 | Canola | cytosol, endoplasmic reticulum, peroxisome | 96.99 | 96.99 |
CDY43609 | Canola | peroxisome | 96.69 | 96.69 |
CDY67454 | Canola | cytosol, endoplasmic reticulum, peroxisome | 96.39 | 96.39 |
CDY32953 | Canola | peroxisome | 96.39 | 96.39 |
AT1G04410.1 | Thale cress | peroxisome | 96.08 | 96.08 |
CDX98109 | Canola | cytosol, endoplasmic reticulum, peroxisome | 63.25 | 95.89 |
Solyc09g090140.2.1 | Tomato | plastid | 93.07 | 93.07 |
PGSC0003DMT400044217 | Potato | cytosol | 92.77 | 92.77 |
Zm00001d032695_P001 | Maize | plasma membrane | 91.27 | 91.27 |
EER94077 | Sorghum | peroxisome | 90.66 | 90.66 |
TraesCS1D01G153900.1 | Wheat | golgi, plastid | 90.36 | 90.09 |
KRH69119 | Soybean | mitochondrion, nucleus | 90.06 | 90.06 |
KRH31702 | Soybean | endoplasmic reticulum | 88.86 | 89.94 |
HORVU1Hr1G041250.5 | Barley | extracellular | 90.06 | 89.79 |
VIT_07s0005g03360.t01 | Wine grape | extracellular | 89.76 | 89.76 |
TraesCS1B01G172400.1 | Wheat | golgi | 89.76 | 89.49 |
GSMUA_Achr4P21920_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 88.86 | 88.86 |
Zm00001d014030_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 83.43 | 88.78 |
GSMUA_Achr5P03900_001 | Banana | plasma membrane | 88.55 | 88.55 |
Os10t0478200-01 | Rice | extracellular | 88.55 | 88.55 |
TraesCS1A01G155200.1 | Wheat | endoplasmic reticulum | 87.35 | 88.41 |
VIT_07s0005g03350.t01 | Wine grape | plastid | 89.76 | 81.64 |
CDY32764 | Canola | endoplasmic reticulum | 70.48 | 62.73 |
CDY32878 | Canola | endoplasmic reticulum, golgi, plasma membrane | 70.18 | 62.47 |
CDY32993 | Canola | plastid | 40.36 | 30.32 |
CDY43863 | Canola | plastid | 40.36 | 30.25 |
CDY58562 | Canola | plastid | 40.36 | 30.18 |
CDX88669 | Canola | plastid | 40.06 | 29.95 |
CDY02811 | Canola | plastid | 39.76 | 29.86 |
CDY32711 | Canola | plastid | 39.76 | 29.8 |
Protein Annotations
KEGG:00020+1.1.1.37 | KEGG:00270+1.1.1.37 | KEGG:00620+1.1.1.37 | KEGG:00630+1.1.1.37 | KEGG:00680+1.1.1.37 | KEGG:00710+1.1.1.37 |
KEGG:00720+1.1.1.37 | MapMan:1.4.2 | Gene3D:3.40.50.720 | Gene3D:3.90.110.10 | MapMan:5.1.1.3 | GO:A0A078DKQ9 |
EnsemblPlants:CDX89826 | ProteinID:CDX89826 | ProteinID:CDX89826.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005975 |
GO:GO:0006108 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0016615 |
GO:GO:0016616 | GO:GO:0019752 | GO:GO:0030060 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00150281001 | InterPro:IPR015955 |
InterPro:L-lactate/malate_DH | InterPro:Lactate/malate_DH_C | InterPro:Lactate/malate_DH_N | InterPro:Lactate_DH/Glyco_Ohase_4_C | InterPro:Malate_DH_AS | InterPro:Malate_DH_NAD-dep_euk |
InterPro:Malate_DH_type2 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF00056 | PFAM:PF02866 | PIRSF:PIRSF000102 | ScanProsite:PS00068 |
PANTHER:PTHR23382 | PANTHER:PTHR23382:SF7 | MetaCyc:PWY-1622 | MetaCyc:PWY-5392 | MetaCyc:PWY-561 | MetaCyc:PWY-5690 |
MetaCyc:PWY-5913 | MetaCyc:PWY-6728 | MetaCyc:PWY-6969 | MetaCyc:PWY-7115 | MetaCyc:PWY-7383 | SUPFAM:SSF51735 |
SUPFAM:SSF56327 | TIGRFAMs:TIGR01758 | TIGRFAMs:TIGR01759 | UniParc:UPI0002B26FAC | SEG:seg | : |
Description
BnaA10g02560D
Coordinates
chrLK031861:+:238308..240553
Molecular Weight (calculated)
35720.2 Da
IEP (calculated)
6.514
GRAVY (calculated)
-0.011
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMTKNVSIY KSQATALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSAGEKPV RELVKNDEYL NGEFITTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYDV PAGLIYSFPV TCRNGEWSIV
301: QGLPIDEMSR KKMDLTAEEL KEEKDLAYSC LS
101: DVMTKNVSIY KSQATALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSAGEKPV RELVKNDEYL NGEFITTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYDV PAGLIYSFPV TCRNGEWSIV
301: QGLPIDEMSR KKMDLTAEEL KEEKDLAYSC LS
001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS
Arabidopsis Description
MDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178W4H0]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.