Factsheet for Bra027485.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32953	Canola	peroxisome	100.0	100.0
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	96.08	96.08
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	95.78	95.78
Bra015314.1-P	Field mustard	peroxisome	95.18	95.18
Solyc09g090140.2.1	Tomato	plastid	93.98	93.98
PGSC0003DMT400044217	Potato	cytosol	93.67	93.67
Zm00001d032695_P001	Maize	plasma membrane	91.57	91.57
EER94077	Sorghum	peroxisome	91.57	91.57
TraesCS1D01G153900.1	Wheat	golgi, plastid	90.96	90.69
VIT_07s0005g03360.t01	Wine grape	extracellular	90.66	90.66
HORVU1Hr1G041250.5	Barley	extracellular	90.66	90.39
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	90.36	90.36
GSMUA_Achr5P03900_001	Banana	plasma membrane	90.36	90.36
KRH31702	Soybean	endoplasmic reticulum	89.16	90.24
TraesCS1B01G172400.1	Wheat	golgi	90.36	90.09
KRH69119	Soybean	mitochondrion, nucleus	90.06	90.06
Os10t0478200-01	Rice	extracellular	89.46	89.46
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	88.25	89.33
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	83.73	89.1
VIT_07s0005g03350.t01	Wine grape	plastid	90.66	82.47
Bra002797.1-P	Field mustard	endoplasmic reticulum	70.48	62.73
Bra002660.1-P	Field mustard	plastid	40.96	30.77
Bra006772.1-P	Field mustard	plastid	40.66	30.41
Bra020374.1-P	Field mustard	plastid	40.36	30.25

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	EnsemblPlantsGene:Bra027485
EnsemblPlants:Bra027485.1	EnsemblPlants:Bra027485.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0005975
GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506
GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752
GO:GO:0030060	GO:GO:0048046	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C
InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M4EFC3	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382
PANTHER:PTHR23382:SF7	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI000254284D
SEG:seg	:	:	:	:	:

Description

AT1G04410 (E=2e-178) | malate dehydrogenase, cytosolic, putative

Coordinates

chrA09:-:13969099..13970601

Molecular Weight (calculated)

35555.9 Da

IEP (calculated)

6.514

GRAVY (calculated)

0.005

Length

332 amino acids

Sequence
(BLAST)

001: MAKDPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAS
201: VKTSSGEKPV RELVKDDEWL NGEFIATVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWSIV
301: QGLPIDEASR KKMDLTAEEL KEEKDLAYSC LS

Best Arabidopsis Sequence Match ( AT1G04410.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178W4H0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.