Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027485.1-P | Field mustard | peroxisome | 96.08 | 96.08 |
| CDY32953 | Canola | peroxisome | 96.08 | 96.08 |
| CDY43609 | Canola | peroxisome | 96.08 | 96.08 |
| CDX98109 | Canola | cytosol, endoplasmic reticulum, peroxisome | 63.25 | 95.89 |
| AT1G04410.1 | Thale cress | peroxisome | 93.98 | 93.98 |
| Solyc09g090140.2.1 | Tomato | plastid | 93.37 | 93.37 |
| PGSC0003DMT400044217 | Potato | cytosol | 93.07 | 93.07 |
| Zm00001d032695_P001 | Maize | plasma membrane | 91.57 | 91.57 |
| EER94077 | Sorghum | peroxisome | 91.57 | 91.57 |
| VIT_07s0005g03360.t01 | Wine grape | extracellular | 91.27 | 91.27 |
| HORVU1Hr1G041250.5 | Barley | extracellular | 90.96 | 90.69 |
| KRH31702 | Soybean | endoplasmic reticulum | 89.46 | 90.55 |
| TraesCS1D01G153900.1 | Wheat | golgi, plastid | 90.66 | 90.39 |
| Os10t0478200-01 | Rice | extracellular | 90.36 | 90.36 |
| GSMUA_Achr5P03900_001 | Banana | plasma membrane | 90.36 | 90.36 |
| GSMUA_Achr4P21920_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 90.36 | 90.36 |
| Zm00001d014030_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 84.64 | 90.06 |
| KRH69119 | Soybean | mitochondrion, nucleus | 90.06 | 90.06 |
| TraesCS1B01G172400.1 | Wheat | golgi | 90.06 | 89.79 |
| TraesCS1A01G155200.1 | Wheat | endoplasmic reticulum | 87.65 | 88.72 |
| VIT_07s0005g03350.t01 | Wine grape | plastid | 91.27 | 83.01 |
| AT5G56720.1 | Thale cress | cytosol, endoplasmic reticulum | 72.29 | 64.52 |
| AT5G58330.1 | Thale cress | plastid | 42.17 | 31.6 |
Protein Annotations
| KEGG:00020+1.1.1.37 | KEGG:00270+1.1.1.37 | KEGG:00620+1.1.1.37 | KEGG:00630+1.1.1.37 | KEGG:00680+1.1.1.37 | KEGG:00710+1.1.1.37 |
| KEGG:00720+1.1.1.37 | MapMan:1.4.2 | Gene3D:3.40.50.720 | Gene3D:3.90.110.10 | MapMan:5.1.1.3 | EntrezGene:834351 |
| ProteinID:AED94946.1 | ArrayExpress:AT5G43330 | EnsemblPlantsGene:AT5G43330 | RefSeq:AT5G43330 | TAIR:AT5G43330 | RefSeq:AT5G43330-TAIR-G |
| EnsemblPlants:AT5G43330.1 | TAIR:AT5G43330.1 | EMBL:AY072137 | EMBL:AY087986 | EMBL:AY091220 | ProteinID:BAA97412.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0005975 |
| GO:GO:0006091 | GO:GO:0006099 | GO:GO:0006107 | GO:GO:0006108 | GO:GO:0006139 | GO:GO:0006734 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016491 |
| GO:GO:0016615 | GO:GO:0016616 | GO:GO:0019752 | GO:GO:0030060 | GO:GO:0048046 | GO:GO:0055114 |
| InterPro:IPR015955 | InterPro:L-lactate/malate_DH | InterPro:Lactate/malate_DH_C | InterPro:Lactate/malate_DH_N | InterPro:Lactate_DH/Glyco_Ohase_4_C | InterPro:Malate_DH_AS |
| InterPro:Malate_DH_NAD-dep_euk | InterPro:Malate_DH_type2 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_199147.1 | UniProt:P57106 | PFAM:PF00056 |
| PFAM:PF02866 | PIRSF:PIRSF000102 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00068 | PANTHER:PTHR23382 | PANTHER:PTHR23382:SF7 | SUPFAM:SSF51735 | SUPFAM:SSF56327 | TIGRFAMs:TIGR01758 |
| TIGRFAMs:TIGR01759 | UniParc:UPI000000179B | SEG:seg | : | : | : |
Description
MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
Coordinates
chr5:+:17390381..17392741
Molecular Weight (calculated)
35677.1 Da
IEP (calculated)
6.779
GRAVY (calculated)
0.025
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.