CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
plastid 2
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	golgi

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g090710.2.1	Tomato	cytosol, unclear	75.87	84.73
VIT_15s0021g02410.t01	Wine grape	cytosol	75.07	84.34
KRH31702	Soybean	endoplasmic reticulum	73.99	84.15
KRH69119	Soybean	mitochondrion, nucleus	74.53	83.73
GSMUA_Achr5P13450_001	Banana	cytosol	65.68	79.29
PGSC0003DMT400066960	Potato	mitochondrion	63.81	70.41
AT5G56720.1	Thale cress	cytosol, endoplasmic reticulum	69.71	69.89
CDY32764	Canola	endoplasmic reticulum	68.1	68.1
Bra002797.1-P	Field mustard	endoplasmic reticulum	67.83	67.83
CDY32878	Canola	endoplasmic reticulum, golgi, plasma membrane	67.83	67.83
KRH34668	Soybean	plastid	39.14	33.49
KRG92120	Soybean	plastid	37.27	32.78

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	EntrezGene:100783188	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3
EMBL:ACUP02008170	EnsemblPlantsGene:GLYMA_13G104800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006107
GO:GO:0006108	GO:GO:0006139	GO:GO:0006734	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752
GO:GO:0030060	GO:GO:0055114	UniProt:I1LXZ7	InterPro:IPR015955	EnsemblPlants:KRH19181	ProteinID:KRH19181
ProteinID:KRH19181.1	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS
InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF5	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561
MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383
SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	TMHMM:TMhelix	UniParc:UPI000233BC0F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:21944728..21949010

Molecular Weight (calculated)

41007.2 Da

IEP (calculated)

6.513

GRAVY (calculated)

0.091

Length

373 amino acids

Sequence
(BLAST)

001: MGLEMIAVEI ADYIVLKKII LVLFCIILFC KIVRYMFSLL KEEKEPITIL VTGAAGQIGY ALVPMIARGA MLGPNQPMIL HMLDIEPATE SLKGLKMELI
101: DAAYPLLRGV VATTDVVEAC KDVNIVVMVG GFPRKEGMER KDVMSKNVSI YKAQASALEQ HAATDCKVLV VANPANTNAL ILKEFAPSIP EKNITCLTRL
201: DHNRALGQIS ERLNVLVSDV KNVIVWGNHS STQYPDVNHA TVTTNSGEKP VRELVVDDNW LNNEFITTVQ QRGAAIIKAR KQSSALSAAS AACDHIRDWV
301: LGTPKGEWVS MGVYSDGSYG IPTGLIYSFP VTCERGDWNI VQGLKIDQFS REKMDKTAQE LIEEKTLAKS CLN

Best Arabidopsis Sequence Match ( AT5G56720.1 )
(BLAST)

001: MEFVGEEINY TFVIQKVLVL LFCVGLSWKM IIYMCNLLNI EKDPIRVLIT GAAGNIGYAI APMIARGIML GPDQPMILHL LDIEPASSSL EAVKMELQDS
101: AFPLLKGVIA TTNVVEACKD VNIVIMIGGF PRIAGMERKD VMSKNVVIYK AQASALERYA SDDCKVLVVA NPANTNALIL KEFAPSIPEE NITCLTRLDH
201: NRALAQLADK LSVPVSSVKN VIVWGNHSST QYPDTNHATV STKTGDRPLK ELVTDHNWLK NEFIVEVQQR GAAVLRARKQ SSAFSAAGAA CDHIRDWFLG
301: TPKGTWVSMG VCSDGSYGIP PGLVYSFPVI CEKGSWKIVQ GLSIDEFSRE KMDDSARELA EEKDLAYSCL NV

Arabidopsis Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UAN5]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.