Factsheet for TraesCS5A01G549900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58330.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G127700.1	Wheat	plastid	92.03	92.03
HORVU4Hr1G090080.1	Barley	cytosol	82.26	88.4
GSMUA_AchrUn_...	Banana	cytosol	48.84	76.92
Os08t0562100-01	Rice	plastid	82.78	74.36
Zm00001d031899_P002	Maize	plastid	81.23	73.15
EES15165	Sorghum	plastid	79.95	72.49
KXG25370	Sorghum	plastid	79.69	71.26
PGSC0003DMT400079767	Potato	cytosol, plastid	76.86	68.26
Solyc11g007990.1.1	Tomato	plastid	77.38	68.1
VIT_13s0019g05250.t01	Wine grape	plastid	75.06	66.82
CDY02811	Canola	plastid	75.06	66.06
KRH34668	Soybean	plastid	74.04	66.06
CDY58562	Canola	plastid	75.32	65.99
CDX88669	Canola	plastid	75.32	65.99
Bra006772.1-P	Field mustard	plastid	75.32	65.99
CDY32711	Canola	plastid	75.06	65.91
CDY32993	Canola	plastid	74.81	65.84
Bra002660.1-P	Field mustard	plastid	74.55	65.61
KRG92120	Soybean	plastid	71.47	65.57
CDY43863	Canola	plastid	74.55	65.46
Bra020374.1-P	Field mustard	plastid	74.55	65.46
AT5G58330.1	Thale cress	plastid	74.04	65.01
Solyc03g071590.2.1	Tomato	plastid	75.32	62.74
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	75.58	60.37
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	15.42	44.44
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	32.65	38.72

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00620+1.1.1.82	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37	KEGG:00710+1.1.1.82	KEGG:00720+1.1.1.37	MapMan:1.2.12	Gene3D:3.40.50.720	Gene3D:3.90.110.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0046554
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_NADP-dep_pln	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866
PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF0	SUPFAM:SSF51735	SUPFAM:SSF56327
TIGRFAMs:TIGR01757	TIGRFAMs:TIGR01759	EnsemblPlantsGene:TraesCS5A01G549900	EnsemblPlants:TraesCS5A01G549900.1	TIGR:cd01338	:

Description

No Description!

Coordinates

chr5A:-:703666163..703669262

Molecular Weight (calculated)

42187.7 Da

IEP (calculated)

6.518

GRAVY (calculated)

-0.120

Length

389 amino acids

Sequence
(BLAST)

001: MLTLQMKDAP LIRDPLSRTG CGHASRGVNG GTPPILDEKT TPWKKLVNVS LTGAAGRISN HLLFKLASGE VFGQDQPLAL KLLGSESSVQ ALEGVAMELE
101: DSLYPLLREV SIGIDPYVIF KDADWALLIG AKPRGPGVER AAILDINGQI FAEQGKALNA VASRNVKVIV VGNPCNTNAL ICLKNAPNLP AKNFHALTRL
201: DENRAKFQLA LQAGVFYDKV SNMTIWGNHS TNQVPDFLNA KINGRPVKEV IKDTKWLEED FTITVQRRGG VLIEKWGRSS AASTAVSIAH AMRSLVTPSP
301: EGDWFSTGVY TTGNPYGIAD DLVFSMPCRS KGDGDYELVQ DVAMDNFLWG RIKKSEAELI AEKRCVAHLT GEGNAFCDLP ADTMLPGEM

Best Arabidopsis Sequence Match ( AT5G58330.1 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.