Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 20363867
plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G090080.1 Barley cytosol 62.1 80.11
GSMUA_AchrUn_... Banana cytosol 42.18 79.76
Solyc11g007990.1.1 Tomato plastid 74.3 78.51
Bra002660.1-P Field mustard plastid 73.45 77.6
CDY32711 Canola plastid 73.45 77.43
CDY02811 Canola plastid 73.23 77.38
CDY43863 Canola plastid 73.23 77.2
CDY32993 Canola plastid 73.02 77.15
Bra020374.1-P Field mustard plastid 73.02 76.98
AT5G58330.1 Thale cress plastid 72.81 76.75
CDY58562 Canola plastid 72.81 76.58
CDX88669 Canola plastid 72.81 76.58
Bra006772.1-P Field mustard plastid 72.81 76.58
Os08t0562100-01 Rice plastid 70.66 76.21
KRH34668 Soybean plastid 71.09 76.15
TraesCS7D01G283900.1 Wheat golgi 70.24 76.1
KRG92120 Soybean plastid 68.95 75.94
VIT_13s0019g05250.t01 Wine grape plastid 70.88 75.74
TraesCS7B01G197000.2 Wheat mitochondrion, plastid 69.59 75.41
TraesCS5A01G549900.1 Wheat cytosol 62.74 75.32
Zm00001d031899_P002 Maize plastid 69.59 75.23
TraesCSU01G135100.2 Wheat plastid 69.16 74.94
HORVU7Hr1G060260.5 Barley plastid 69.16 74.6
TraesCSU01G127700.1 Wheat plastid 62.1 74.55
EES15165 Sorghum plastid 68.31 74.36
KXG25370 Sorghum plastid 68.52 73.56
GSMUA_AchrUn_... Banana endoplasmic reticulum, golgi, peroxisome 70.66 67.76
GSMUA_AchrUn_... Banana nucleus, peroxisome, plastid 15.63 54.07
Solyc09g090140.2.1 Tomato plastid 28.05 39.46
Solyc01g090710.2.1 Tomato cytosol, unclear 27.62 38.62
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00620+1.1.1.82KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37KEGG:00710+1.1.1.82KEGG:00720+1.1.1.37MapMan:1.2.12Gene3D:3.40.50.720Gene3D:3.90.110.10
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0005975GO:GO:0006091GO:GO:0006099GO:GO:0006107GO:GO:0006108
GO:GO:0006139GO:GO:0006734GO:GO:0008150GO:GO:0008152GO:GO:0009507GO:GO:0009536
GO:GO:0009987GO:GO:0016491GO:GO:0016615GO:GO:0016616GO:GO:0030060GO:GO:0046554
GO:GO:0055114InterPro:IPR015955UniProt:K4BHI9InterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_NInterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_ASInterPro:Malate_DH_NADP-dep_plnInterPro:Malate_DH_type2InterPro:NAD(P)-bd_dom_sfPFAM:PF00056PFAM:PF02866
ScanProsite:PS00068PANTHER:PTHR23382PANTHER:PTHR23382:SF0SUPFAM:SSF51735SUPFAM:SSF56327EnsemblPlantsGene:Solyc03g071590.2
EnsemblPlants:Solyc03g071590.2.1TIGRFAMs:TIGR01757TIGRFAMs:TIGR01759UniParc:UPI0002767BCCSEG:seg:
Description
No Description!
Coordinates
chr3:-:18254319..18259019
Molecular Weight (calculated)
51670.5 Da
IEP (calculated)
7.816
GRAVY (calculated)
-0.045
Length
467 amino acids
Sequence
(BLAST)
001: MAVAEFIPSS SLTKTTSLYP SQFLHVSTHK PRLSLTPLRR SKICCSVISN APVPVAKEPT KKTECFGVFC LTYDLKAEEE TSSWKKLINV SVSGAAGMIA
101: NHFLFKLASG EVFGPDQPVA LKLLGSERSI QALEGVAMEL EDSLFPLLRE VSIGIDPYEV FQDAEWALLI GAKPRGPGME RAGLLDINGQ IFAEQGKALN
201: AVASRNVKVI VVGNPCNTNA LICLKNAPDI PAKNFHALTR LDENRAKCQL ALKAGVFYDK VSNMTIWGNH STTQVPDFLN AKINGFPVKD VIRDSKWLEE
301: EFTEKIQKRG GVLIQKWGRS SAASTAVSVV DAMRSLVTPT PEGDWFSTGV YTNGNPYGIA KDIVFSMPCR SKGDGDYELV KDVLMDDYLR SRIKKSEDEL
401: LAEKRCVAHL TGEVRFFFAF FVFAPLLRVV STKVLVYVIC QETQCSLEKC ETMEQGYQRL LTFVERV
Best Arabidopsis Sequence Match ( AT5G58330.1 )
(BLAST)
001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV
Arabidopsis Description
Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.