Factsheet for GSMUA_AchrUn_randomP07600_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, peroxisome

Predictor Summary:

plastid 4
mitochondrion 1
golgi 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	43.74	86.23
HORVU4Hr1G090080.1	Barley	cytosol	59.96	80.66
Zm00001d031899_P002	Maize	plastid	70.23	79.17
EES15165	Sorghum	plastid	69.4	78.79
VIT_13s0019g05250.t01	Wine grape	plastid	70.43	78.49
KRH34668	Soybean	plastid	70.23	78.44
KRG92120	Soybean	plastid	68.17	78.3
Os08t0562100-01	Rice	plastid	69.61	78.29
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	68.38	77.26
KXG25370	Sorghum	plastid	68.99	77.24
TraesCSU01G135100.2	Wheat	plastid	68.17	77.03
TraesCS7D01G283900.1	Wheat	golgi	67.97	76.8
CDY02811	Canola	plastid	69.61	76.7
HORVU7Hr1G060260.5	Barley	plastid	68.17	76.67
Bra020374.1-P	Field mustard	plastid	69.61	76.52
CDY32993	Canola	plastid	69.4	76.47
Bra002660.1-P	Field mustard	plastid	69.4	76.47
CDY58562	Canola	plastid	69.61	76.35
CDY32711	Canola	plastid	69.4	76.3
CDX88669	Canola	plastid	69.4	76.13
Bra006772.1-P	Field mustard	plastid	69.4	76.13
CDY43863	Canola	plastid	69.2	76.07
AT5G58330.1	Thale cress	plastid	69.2	76.07
TraesCSU01G127700.1	Wheat	plastid	60.57	75.84
PGSC0003DMT400079767	Potato	cytosol, plastid	68.17	75.8
TraesCS5A01G549900.1	Wheat	cytosol	60.37	75.58
Solyc11g007990.1.1	Tomato	plastid	68.38	75.34
Solyc03g071590.2.1	Tomato	plastid	67.76	70.66
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	18.07	65.19
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	27.31	40.06
GSMUA_Achr5P03900_001	Banana	plasma membrane	27.1	39.76
GSMUA_Achr5P13450_001	Banana	cytosol	24.64	38.84

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00620+1.1.1.82	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37	KEGG:00710+1.1.1.82	KEGG:00720+1.1.1.37	MapMan:1.2.12	Gene3D:3.40.50.720	Gene3D:3.90.110.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0046554	GO:GO:0055114
EnsemblPlantsGene:GSMUA_AchrUn_randomG07600_001	EnsemblPlants:GSMUA_AchrUn_randomP07600_001	EnsemblPlants:GSMUA_AchrUn_randomT07600_001	InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M0U771	InterPro:Malate_DH_AS	InterPro:Malate_DH_NADP-dep_pln	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF0	SUPFAM:SSF51735
SUPFAM:SSF56327	TIGRFAMs:TIGR01757	TIGRFAMs:TIGR01759	UniParc:UPI0002969975	SEG:seg	:

Description

Malate dehydrogenase [NADP], chloroplastic [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG07600_001]

Coordinates

chrchrUn_random:+:32502623..32508819

Molecular Weight (calculated)

52933.7 Da

IEP (calculated)

7.816

GRAVY (calculated)

-0.123

Length

487 amino acids

Sequence
(BLAST)

001: MTQVLKKKAS RESIVSPDPP SSSFPSSSCL LLLSFLCLTL HSSHLSMALL EISPSYAGSR ALPPNDLSSR PINPLLAFKN RRPSLPCSAR RIPRILCSVS
101: PNQVQAPVLS ATPAGATSKR ECFGVFCTTY DLKAADKTKS WKGLINIAVS GAAGMISNHL LFKLASGEVF GPDQPIALKL LGSERSFQAL EGVAMELEDS
201: LYPLLREVSI GKDPYEVFQD AEWALLIGAK PRGPGMERAG LLDINGQIFA EQGKALNDVA SRNVKVIVVG NPCNTNALIC LKNAPNIPAK NFHALTRLDE
301: NRAKCQLALK AGVFYDKVSN MTIWGNHSTT QVPDFLNAKI NGMPVTEVIT DVKWLKEEFT ERVQKRGGVL IQKWGRSSAA STAVSIVDAI RSLITPTPDG
401: DWFSSGVYST GNPYGIAEDI VFSMPCRSKG DGDYELAKDV IFDDYLRERI KKTEAELLAE KRCVAHLTGE GNAYCDLPED TMLPGEQ

Best Arabidopsis Sequence Match ( AT5G58330.1 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.