CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014436.1-P	Field mustard	mitochondrion	100.0	100.0
CDY43932	Canola	mitochondrion	99.18	99.18
CDX71737	Canola	mitochondrion	97.01	97.01
AT3G61440.1	Thale cress	mitochondrion	90.76	90.76
CDY48919	Canola	endoplasmic reticulum	71.2	83.17
Solyc10g012370.2.1	Tomato	mitochondrion	76.36	80.06
PGSC0003DMT400000156	Potato	mitochondrion	75.27	79.83
PGSC0003DMT400016646	Potato	mitochondrion	75.82	79.49
PGSC0003DMT400034224	Potato	cytosol	15.76	79.45
KRH74905	Soybean	cytosol	17.12	78.75
KRH40428	Soybean	mitochondrion	78.8	77.75
KRH00797	Soybean	mitochondrion	78.53	77.69
Solyc01g094790.2.1	Tomato	plastid	74.73	77.03
VIT_15s0046g02300.t01	Wine grape	mitochondrion	76.9	76.28
VIT_04s0044g00250.t01	Wine grape	mitochondrion	72.28	74.09
GSMUA_Achr5P19480_001	Banana	mitochondrion	70.38	72.14
PGSC0003DMT400040030	Potato	cytosol	20.65	71.03
PGSC0003DMT400012263	Potato	cytosol	20.38	70.09
PGSC0003DMT400021594	Potato	cytosol	19.02	69.31
TraesCS5B01G300800.1	Wheat	mitochondrion	69.57	67.72
Os04t0165700-01	Rice	mitochondrion	69.29	67.64
TraesCS5A01G300400.1	Wheat	mitochondrion	69.84	67.63
EES11801	Sorghum	mitochondrion	70.92	67.62
Zm00001d004413_P002	Maize	mitochondrion	70.11	67.54
HORVU7Hr1G023500.1	Barley	cytosol	19.29	66.98
PGSC0003DMT400064098	Potato	cytosol	13.04	61.54
Solyc04g058120.1.1	Tomato	mitochondrion	15.22	61.54
CDY68436	Canola	cytosol	52.99	60.56
CDY29778	Canola	cytosol, peroxisome, plastid	49.73	60.4
CDY42795	Canola	cytosol	52.72	60.25
CDY09039	Canola	cytosol	50.82	59.94
CDY69239	Canola	cytosol	48.64	55.76
HORVU2Hr1G000280.3	Barley	golgi, peroxisome, plastid	69.02	55.7
CDY50768	Canola	cytosol	48.37	55.45
CDY41911	Canola	cytosol	48.37	55.45
CDX74160	Canola	cytosol	47.83	54.83
CDY52498	Canola	cytosol	47.55	54.18
CDY05586	Canola	cytosol	47.28	53.87
CDY41913	Canola	cytosol	44.29	53.62
CDY00007	Canola	cytosol	46.74	53.25
CDX86187	Canola	cytosol	43.75	52.96
CDY19703	Canola	cytosol	46.47	52.94
CDX80680	Canola	cytosol	42.93	51.97
CDY17914	Canola	plastid	53.53	50.26
CDY19702	Canola	mitochondrion	47.83	50.14
CDX79804	Canola	plastid	53.53	49.75
CDY00008	Canola	mitochondrion	47.28	49.57
CDY30438	Canola	plastid	52.17	49.36
CDY68838	Canola	mitochondrion	18.21	49.26
CDY23400	Canola	plastid	51.9	49.1
CDX89032	Canola	plastid	55.16	47.32
CDY45790	Canola	plastid	54.62	47.07
PGSC0003DMT400080490	Potato	cytosol, mitochondrion, nucleus, plastid	16.03	44.7
CDY29946	Canola	plastid	47.55	44.64
CDY21176	Canola	plastid	47.55	44.53
CDY41915	Canola	cytosol	6.52	38.71
CDY52906	Canola	plastid	27.17	23.15
CDY53756	Canola	endoplasmic reticulum	27.17	22.83

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00460+4.4.1.9	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:50.2.5	GO:A0A078DIS3
InterPro:CAS	EnsemblPlants:CDX89116	ProteinID:CDX89116	ProteinID:CDX89116.1	InterPro:CysK	InterPro:Cys_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019499	GO:GO:0050017	EnsemblPlantsGene:GSBRNA2T00149254001	InterPro:P-phosphate_BS
PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF80	MetaCyc:PWY-6936
SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent	UniPathway:UPA00136	UniParc:UPI0002543846
SEG:seg	:	:	:	:	:

Description

BnaA04g00700D

Coordinates

chrLK031857:+:1120952..1123228

Molecular Weight (calculated)

39871.3 Da

IEP (calculated)

8.617

GRAVY (calculated)

-0.148

Length

368 amino acids

Sequence
(BLAST)

001: MATVWRRLLK TETIPRISQS TRKLFSTDAP SSFADRLRNL PKDFPSTQAK RDASLLIGRT PLVFLNRVTE GCEAYIAAKQ EHFQPTCSVK DRPALAMVAD
101: AEKKNLITPG KTTLIEPTSG NMGISMAFIA ALKGYKIIMT MPSYTSLERR VTMRSFGAEL VLTDPAKGMG GTVKKAYDLL ESTPDAHMLQ QFANPANTQI
201: HFDTTGPEIW EDTLGNVDIF VMGIGSGGTV SGVGQYLKSK NPNVKIYGVE PAESNILNGG KPGPHAITGN GVGFKPDILD MDVMESVLEV SSEDAIKMAR
301: ELALKEGLMV GISSGANTVA AIRLAKMPEN KGKLIVTIHA SFGERYLSSV LFDELRKEAE AMKPVSVD

Best Arabidopsis Sequence Match ( AT3G61440.1 )
(BLAST)

001: MASVSRRLLR RETIPCFSHT VRKLFSTVGS PSFAQRLRDL PKDFPSTNAK RDASLLIGKT PLVFLNKVTE GCEAYVAAKQ EHFQPTCSIK DRPAIAMIAD
101: AEKKKLIIPG KTTLIEPTSG NMGISLAFMA AMKGYRIIMT MPSYTSLERR VTMRSFGAEL VLTDPAKGMG GTVKKAYDLL DSTPDAFMCQ QFANPANTQI
201: HFDTTGPEIW EDTLGNVDIF VMGIGSGGTV SGVGRYLKSK NPNVKIYGVE PAESNILNGG KPGPHAITGN GVGFKPEILD MDVMESVLEV SSEDAIKMAR
301: ELALKEGLMV GISSGANTVA AIRLAKMPEN KGKLIVTIHA SFGERYLSSV LFDELRKEAE EMKPVSVD

Arabidopsis Description

CYSC1Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9S757]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.