CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03630.1	CDX86457	AT3G27960.1	21798944
AT3G03630.1	CDY58518	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21176	Canola	plastid	97.19	96.95
AT3G03630.1	Thale cress	plastid	86.73	84.16
KRH64961	Soybean	nucleus, plastid	67.35	70.59
KRG94935	Soybean	nucleus	66.07	69.81
VIT_08s0056g00820.t01	Wine grape	plastid	66.33	66.67
CDY68436	Canola	cytosol	50.77	61.8
Os01t0814800-01	Rice	plastid	61.73	61.73
CDY42795	Canola	cytosol	50.51	61.49
TraesCS3D01G332100.1	Wheat	plastid	59.44	61.48
EES03791	Sorghum	plastid	60.2	61.46
TraesCS3B01G370200.3	Wheat	plastid	58.93	61.27
CDY29778	Canola	cytosol, peroxisome, plastid	47.19	61.06
TraesCS3A01G338600.3	Wheat	plastid	58.93	60.95
CDY09039	Canola	cytosol	47.96	60.26
HORVU3Hr1G079890.1	Barley	plastid	59.95	60.26
CDY69239	Canola	cytosol	46.94	57.32
GSMUA_Achr8P00260_001	Banana	mitochondrion	64.03	57.31
CDY00007	Canola	cytosol	47.19	57.28
CDY41911	Canola	cytosol	46.68	57.01
CDY50768	Canola	cytosol	46.68	57.01
CDY19703	Canola	cytosol	46.94	56.97
CDY52498	Canola	cytosol	46.68	56.66
CDX74160	Canola	cytosol	46.17	56.39
CDY05586	Canola	cytosol	46.43	56.35
CDY41913	Canola	cytosol	43.37	55.92
CDX86187	Canola	cytosol	42.35	54.61
CDX80680	Canola	cytosol	42.09	54.28
CDY30438	Canola	plastid	53.83	54.24
CDY23400	Canola	plastid	53.83	54.24
CDY17914	Canola	plastid	54.08	54.08
CDX79804	Canola	plastid	54.08	53.54
CDY19702	Canola	mitochondrion	47.19	52.71
CDY00008	Canola	mitochondrion	47.19	52.71
CDX89032	Canola	plastid	53.83	49.18
CDY45790	Canola	plastid	53.32	48.95
CDX89116	Canola	mitochondrion	44.64	47.55
CDX71737	Canola	mitochondrion	44.39	47.28
CDY43932	Canola	mitochondrion	44.39	47.28
Zm00001d043101_P001	Maize	plastid	22.96	46.39
CDY48919	Canola	endoplasmic reticulum	36.48	45.4
CDY41915	Canola	cytosol	5.61	35.48
CDY68838	Canola	mitochondrion	11.99	34.56
CDY53756	Canola	endoplasmic reticulum	25.77	23.06
CDY52906	Canola	plastid	25.26	22.92

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:50.2.5	GO:A0A078GWN3	UniProt:A0A078GWN3
EnsemblPlants:CDY29946	ProteinID:CDY29946	ProteinID:CDY29946.1	InterPro:CysK	InterPro:Cys_synth	GO:GO:0003674
GO:GO:0003824	GO:GO:0004124	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	EnsemblPlantsGene:GSBRNA2T00044461001	InterPro:P-phosphate_BS
PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF90	MetaCyc:PWY-6936
SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent	UniPathway:UPA00136	UniParc:UPI0001D165EA
SEG:seg	:	:	:	:	:

Description

BnaC01g40620DCysteine synthase [Source:UniProtKB/TrEMBL;Acc:A0A078GWN3]

Coordinates

chrLK032247:-:14531..17046

Molecular Weight (calculated)

41991.7 Da

IEP (calculated)

7.276

GRAVY (calculated)

-0.094

Length

392 amino acids

Sequence
(BLAST)

001: MALSSPSLLR LLPHHPFTLT TSKRHRFLSL NHEPSSSSLV VAAVSSKPST RTKQKSKSKS KPPPPPPPPV TTVSHEVGTE DSETVNIAED VTQLIGSTPM
101: VYLNRVTDGC VADVAAKLES MEPCRSVKDR IGLSMINEAE DRGDITPRKS VLVEPTTGNT GLGIAFVAAA KGYKLIVTMP ASINVERRML LRALGAEIVL
201: TSPEKGLKGA VEKAKEIVLK TKNAYMFQQF DNTANTKIHF ETTGPEIWED TMGNVDIFVA GIGTGGTVTG TGSFLKMMNP DIKVVGVEPS ERSVISGDSP
301: GYVPGILDVK LLDEVFKVSN EEAIEMARRL ALEEGLLVGI SSGAAAVAAI SLAKRAENTG KLITVLFPSH GERYITTALF SSINKEVQEM SH

Best Arabidopsis Sequence Match ( AT3G03630.1 )
(BLAST)

001: MAFASPSLRL LPQSPLGRIT SKLHRFSTAK LSLFSFHHDS SSSLAVRTPV SSFVVGAISG KSSTGTKSKS KTKRKPPPPP PVTTVAEEQH IAESETVNIA
101: EDVTQLIGST PMVYLNRVTD GCLADIAAKL ESMEPCRSVK DRIGLSMINE AENSGAITPR KTVLVEPTTG NTGLGIAFVA AAKGYKLIVT MPASINIERR
201: MLLRALGAEI VLTNPEKGLK GAVDKAKEIV LKTKNAYMFQ QFDNTANTKI HFETTGPEIW EDTMGNVDIF VAGIGTGGTV TGTGGFLKMM NKDIKVVGVE
301: PSERSVISGD NPGYLPGILD VKLLDEVFKV SNGEAIEMAR RLALEEGLLV GISSGAAAVA AVSLAKRAEN AGKLITVLFP SHGERYITTA LFSSINREVQ
401: EMRY

Arabidopsis Description

CS26Probable S-sulfocysteine synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22682]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.