CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY18326
CDY42446
CDY48649
CDY66135

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	CDY18326	AT5G54390.1	21798944
AT5G28020.1	CDY42446	AT5G54390.1	21798944
AT5G28020.1	CDY48649	AT5G54390.1	21798944
AT5G28020.1	CDY66135	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86187	Canola	cytosol	97.7	97.7
Bra009985.1-P	Field mustard	cytosol	88.82	97.47
CDY52498	Canola	cytosol	89.8	84.52
CDY05586	Canola	cytosol	89.47	84.21
CDY00007	Canola	cytosol	88.16	82.97
CDY19703	Canola	cytosol	88.16	82.97
AT5G28020.1	Thale cress	cytosol	87.17	82.04
CDY19702	Canola	mitochondrion	86.84	75.21
CDY00008	Canola	mitochondrion	85.53	74.07
CDY69239	Canola	cytosol	75.99	71.96
CDX74160	Canola	cytosol	75.66	71.65
CDY41911	Canola	cytosol	75.0	71.03
CDY50768	Canola	cytosol	75.0	71.03
CDY41913	Canola	cytosol	70.39	70.39
KRH13764	Soybean	cytosol	71.05	67.29
Solyc01g097940.1.1	Tomato	plasma membrane	42.76	66.33
CDY29778	Canola	cytosol, peroxisome, plastid	65.79	66.01
KRG92757	Soybean	cytosol	68.75	64.71
VIT_14s0030g01520.t01	Wine grape	cytosol	67.43	63.47
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	67.76	63.38
KRH34052	Soybean	cytosol	67.43	63.27
CDY09039	Canola	cytosol	64.8	63.14
KRH43690	Soybean	cytosol	48.36	63.09
CDY42795	Canola	cytosol	65.79	62.11
KRH34037	Soybean	cytosol	65.79	61.92
CDY68436	Canola	cytosol	65.46	61.8
KXG24064	Sorghum	cytosol	65.79	61.54
TraesCS5D01G027600.1	Wheat	cytosol, golgi	65.79	61.54
Zm00001d031136_P003	Maize	plasma membrane	65.79	61.54
GSMUA_Achr11P...	Banana	cytosol	65.46	61.42
GSMUA_Achr9P25760_001	Banana	cytosol	64.8	60.8
Solyc01g097950.2.1	Tomato	cytosol	64.14	60.37
GSMUA_Achr4P21350_001	Banana	cytosol	64.47	60.31
VIT_14s0030g01550.t01	Wine grape	cytosol	67.76	60.23
Solyc01g097930.2.1	Tomato	cytosol	63.49	59.75
CDY41915	Canola	cytosol	12.17	59.68
HORVU3Hr1G040910.1	Barley	mitochondrion	6.58	58.82
TraesCS2B01G316800.1	Wheat	cytosol	62.83	58.41
TraesCS2A01G300600.1	Wheat	cytosol	62.5	58.1
Solyc01g097920.2.1	Tomato	cytosol, plastid	66.78	57.02
Os12t0625000-01	Rice	plasma membrane	64.14	56.2
HORVU2Hr1G074630.2	Barley	cytosol	51.97	54.48
TraesCS2D01G298600.2	Wheat	cytosol	62.83	53.35
KXG26295	Sorghum	cytosol	60.86	52.86
Zm00001d003717_P001	Maize	cytosol	59.87	51.7
CDY23400	Canola	plastid	63.82	49.87
CDY30438	Canola	plastid	63.49	49.61
KRG92761	Soybean	cytosol	53.95	49.55
CDY17914	Canola	plastid	63.82	49.49
CDX79804	Canola	plastid	63.82	48.99
HORVU5Hr1G015070.1	Barley	extracellular	10.86	48.53
TraesCS5A01G022200.1	Wheat	plastid	65.13	46.26
VIT_14s0030g01490.t01	Wine grape	cytosol	66.78	46.24
TraesCS5B01G018700.3	Wheat	plastid	66.12	45.79
CDX89032	Canola	plastid	64.47	45.69
CDY45790	Canola	plastid	64.14	45.67
HORVU5Hr1G005980.2	Barley	plastid	65.46	45.54
CDX71737	Canola	mitochondrion	51.97	42.93
CDX89116	Canola	mitochondrion	51.97	42.93
CDY43932	Canola	mitochondrion	51.64	42.66
CDY29946	Canola	plastid	54.28	42.09
CDY48919	Canola	endoplasmic reticulum	43.09	41.59
CDY21176	Canola	plastid	53.62	41.48
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	22.04	35.83
CDY68838	Canola	mitochondrion	14.14	31.62
HORVU1Hr1G031220.3	Barley	plastid	34.87	26.04
CDY52906	Canola	plastid	30.92	21.76
CDY53756	Canola	endoplasmic reticulum	31.25	21.69

Protein Annotations

EnsemblPlants:CDX80680	EnsemblPlantsGene:GSBRNA2T00133834001	Gene3D:3.40.50.1100	GO:A0A078CV27	GO:GO:0006535	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:P-phosphate_BS	InterPro:PLP-dep	InterPro:Trypto_synt_PLP_dependent
PANTHER:PTHR10314	PANTHER:PTHR10314:SF97	PFAM:PF00291	ProteinID:CDX80680	ProteinID:CDX80680.1	ScanProsite:PS00901
SEG:seg	SUPFAM:SSF53686	UniParc:UPI0004EE4128	MapMan:50.2.5	:	:

Description

BnaC07g27640D

Coordinates

chrLK031821:-:2069287..2072032

Molecular Weight (calculated)

32655.7 Da

IEP (calculated)

4.894

GRAVY (calculated)

-0.013

Length

304 amino acids

Sequence
(BLAST)

001: MEDRCLIKND VTELIGNTPM VYLNKIADGC VARIAAKLEM MEPCSSIKDR IAYSMIKDAE DKGLITPGES TLIEPTAGNT GIGLACIGAA RGYKVIILMS
101: SSMSLERRII LRALGAELHL TDRSIGFKGM LEKTEEMLSK TSGGFVPQQF ENPSNPEIHY RTTGPEIWRD SAGKFLKEMN QNIKVCAVEP TESPVLSGGE
201: PGSHLIQGIG AGIIPTNLDL SIVDEIIQVT GEEATETAKL LALKEGLLVG ISSGATAAAA LKVAKRPENA GKLIVVIFAS GGERYLSTKL FDSVRYEAEN
301: LQIE

Best Arabidopsis Sequence Match ( AT5G28020.1 )
(BLAST)

001: MEDRCLIKND ITELIGNTPM VYLNNVVDGC VARIAAKLEM MEPCSSVKDR IAYSMIKDAE DKGLITPGKS TLIEPTAGNT GIGLACMGAA RGYKVILVMP
101: STMSLERRII LRALGAELHL SDQRIGLKGM LEKTEAILSK TPGGYIPQQF ENPANPEIHY RTTGPEIWRD SAGKVDILVA GVGTGGTATG VGKFLKEQNK
201: DIKVCVVEPV ESPVLSGGQP GPHLIQGIGS GIVPFNLDLT IVDEIIQVAG EEAIETAKLL ALKEGLLVGI SSGAAAAAAL KVAKRPENAG KLIVVVFPSG
301: GERYLSTKLF DSIRYEAENL PIE

Arabidopsis Description

CYSD2Bifunctional L-3-cyanoalanine synthase/cysteine synthase D2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.