CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH26049
KRH55364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	KRH26049	AT5G54390.1	21798944
AT5G28020.1	KRH55364	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92757	Soybean	cytosol	96.91	97.21
KRH34037	Soybean	cytosol	80.56	80.81
KRH13764	Soybean	cytosol	79.63	80.37
VIT_14s0030g01520.t01	Wine grape	cytosol	76.54	76.78
KRH43690	Soybean	cytosol	52.78	73.39
AT3G04940.1	Thale cress	cytosol	72.84	72.84
CDY50768	Canola	cytosol	71.91	72.59
CDY41911	Canola	cytosol	71.91	72.59
KRH27640	Soybean	cytosol	72.53	72.31
VIT_14s0030g01550.t01	Wine grape	cytosol	76.23	72.22
GSMUA_Achr9P25760_001	Banana	cytosol	71.91	71.91
KRG96937	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	71.91	71.69
KRH68699	Soybean	cytosol	71.91	71.69
CDY69239	Canola	cytosol	70.99	71.65
GSMUA_Achr11P...	Banana	cytosol	71.6	71.6
CDX74160	Canola	cytosol	70.68	71.34
KRG91325	Soybean	cytosol, mitochondrion, nucleus	71.3	71.08
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	71.3	71.08
Zm00001d031136_P003	Maize	plasma membrane	70.68	70.46
KXG24064	Sorghum	cytosol	70.68	70.46
TraesCS5D01G027600.1	Wheat	cytosol, golgi	70.37	70.15
GSMUA_Achr4P21350_001	Banana	cytosol	70.37	70.15
Solyc01g097950.2.1	Tomato	cytosol	69.44	69.66
Bra036115.1-P	Field mustard	cytosol	69.14	69.35
CDY41913	Canola	cytosol	64.81	69.08
CDY00007	Canola	cytosol	68.83	69.04
AT5G28020.1	Thale cress	cytosol	68.52	68.73
CDY05586	Canola	cytosol	68.52	68.73
CDY19703	Canola	cytosol	68.52	68.73
CDY52498	Canola	cytosol	68.52	68.73
AT5G28030.2	Thale cress	cytosol	68.21	68.42
CDX86187	Canola	cytosol	63.58	67.76
CDX80680	Canola	cytosol	63.27	67.43
KRH35519	Soybean	cytosol	63.27	67.21
Bra009985.1-P	Field mustard	cytosol	57.41	67.15
Solyc01g097940.1.1	Tomato	plasma membrane	39.81	65.82
Os12t0625000-01	Rice	plasma membrane	69.75	65.13
Solyc01g097920.2.1	Tomato	cytosol, plastid	71.3	64.89
TraesCS2B01G316800.1	Wheat	cytosol	64.81	64.22
Solyc01g097930.2.1	Tomato	cytosol	63.89	64.09
TraesCS2A01G300600.1	Wheat	cytosol	64.51	63.91
CDY19702	Canola	mitochondrion	69.14	63.82
CDY00008	Canola	mitochondrion	68.83	63.53
Bra036114.1-P	Field mustard	cytosol	66.67	63.16
KRG92761	Soybean	cytosol	63.89	62.54
KRH77854	Soybean	cytosol	14.2	62.16
HORVU2Hr1G074630.2	Barley	cytosol	54.94	61.38
KXG26295	Sorghum	cytosol	64.81	60.0
Zm00001d003717_P001	Maize	cytosol	64.81	59.66
HORVU3Hr1G040910.1	Barley	mitochondrion	6.17	58.82
TraesCS2D01G298600.2	Wheat	cytosol	64.81	58.66
Bra001131.1-P	Field mustard	mitochondrion	70.06	56.75
KRH50190	Soybean	nucleus, plastid	67.9	56.56
CDY41915	Canola	cytosol	10.8	56.45
KRH71273	Soybean	nucleus, plastid	68.52	56.35
VIT_14s0030g01490.t01	Wine grape	cytosol	75.62	55.81
KRH74905	Soybean	cytosol	13.27	53.75
TraesCS5A01G022200.1	Wheat	plastid	70.06	53.04
TraesCS5B01G018700.3	Wheat	plastid	70.37	51.94
HORVU5Hr1G005980.2	Barley	plastid	69.75	51.72
HORVU5Hr1G015070.1	Barley	extracellular	10.8	51.47
KRG94935	Soybean	nucleus	57.72	50.4
KRH64961	Soybean	nucleus, plastid	58.02	50.27
Bra020605.1-P	Field mustard	mitochondrion	66.67	49.77
KRH40428	Soybean	mitochondrion	56.79	49.33
KRH00797	Soybean	mitochondrion	56.48	49.19
Bra040417.1-P	Field mustard	cytosol	46.91	48.72
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	27.78	48.13
HORVU1Hr1G031220.3	Barley	plastid	37.65	29.98
KRH14231	Soybean	mitochondrion	33.64	25.65
KRH73904	Soybean	cytosol	28.7	22.04

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	EntrezGene:100775420	Gene3D:3.40.50.1100	MapMan:50.2.5	EMBL:ACUP02006571
InterPro:CysK	InterPro:Cys_synth	EnsemblPlantsGene:GLYMA_10G159800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006535
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019344	GO:GO:0030170	UniProt:I1LBI3	ProteinID:KRH34047.1	ProteinID:KRH34048.1	ProteinID:KRH34049.1
ProteinID:KRH34050.1	ProteinID:KRH34051.1	EnsemblPlants:KRH34052	ProteinID:KRH34052	ProteinID:KRH34052.1	InterPro:P-phosphate_BS
PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF97	MetaCyc:PWY-6936
SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000233CC4F	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:39411242..39416676

Molecular Weight (calculated)

34566.1 Da

IEP (calculated)

5.117

GRAVY (calculated)

0.086

Length

324 amino acids

Sequence
(BLAST)

001: MEEPQCAIKK DATELVGNTP MVFLNNIVVG CVARIAAKLE YMQACCSVKD RIALSMIEDA EKKGLITPGK TVLVEYTSGN TGIGLAFIAA LRGYKLQVTM
101: PSYVSLERKI ILRAFGAEVY LTDPAKGIDG VIQKAEELLA KTPDSFMLNQ FENPANPNIH YETTGPEIWR DSGGKIDALV AGIGTGGSIA GAGRFLREKN
201: PDIKLYGVEP AESAVLNGGQ PGKHLIQGIG AGIIPKVLDV NLLDEVIQVS SEEAIETAKL LALKEGLLMG ISSGAAAAAA IKVGKRPENA GKLIVVIFPS
301: FGERYLSSPL FESIRKEAEQ MTFD

Best Arabidopsis Sequence Match ( AT3G04940.2 )
(BLAST)

001: MEEDRCSIKD DATQLIGNTP MVYLNNIVDG CVARIAAKLE MMEPCSSVKE RIAYGMIKDA EDKGLITPGK STLIEATSGN TGIGLAFIGA AKGYKVVLTM
101: PSSMSLERKI ILLALGAEVH LTDPSKGVQG IIDKAEEICS KNPDSIMLEQ FKNPSNPQTH YRTTGPEIWR DSAGEVDILV AGVGTGGTLS GSGRFLKEKN
201: KDFKVYGVEP TESAVISGGK PGTHLIQGIG AGLIPDNLDF NVLDEVIQVT SVEAIETAKL LALKEGLLVG ISSGAAAAAA IKVAKRPENA GKLIVVIFPS
301: GGERYLSTSL FESVRHEAEN LPIQ

Arabidopsis Description

CYSD1Bifunctional L-3-cyanoalanine synthase/cysteine synthase D1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S6Z7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.