Factsheet for Bra020605.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002992.1-P
Bra022717.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	Bra002992.1-P	AT5G54390.1	21798944
AT5G28020.1	Bra022717.1-P	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52498	Canola	cytosol	71.43	95.98
CDY05586	Canola	cytosol	70.97	95.36
AT5G28020.1	Thale cress	cytosol	65.44	87.93
Bra009985.1-P	Field mustard	cytosol	55.07	86.28
Bra036115.1-P	Field mustard	cytosol	62.21	83.59
Bra036114.1-P	Field mustard	cytosol	62.21	78.95
Bra001131.1-P	Field mustard	mitochondrion	70.51	76.5
KRH13764	Soybean	cytosol	52.77	71.34
VIT_14s0030g01520.t01	Wine grape	cytosol	51.38	69.04
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	51.38	68.62
KRG92757	Soybean	cytosol	50.23	67.49
KRH34052	Soybean	cytosol	49.77	66.67
GSMUA_Achr11P...	Banana	cytosol	49.54	66.36
TraesCS5D01G027600.1	Wheat	cytosol, golgi	49.54	66.15
KXG24064	Sorghum	cytosol	49.54	66.15
Zm00001d031136_P003	Maize	plasma membrane	49.54	66.15
GSMUA_Achr4P21350_001	Banana	cytosol	49.54	66.15
KRH43690	Soybean	cytosol	35.48	66.09
Bra036910.1-P	Field mustard	plastid	48.39	65.83
Solyc01g097940.1.1	Tomato	plasma membrane	29.72	65.82
KRH34037	Soybean	cytosol	48.85	65.63
Bra039708.1-P	Field mustard	cytosol	48.62	65.53
GSMUA_Achr9P25760_001	Banana	cytosol	48.85	65.43
HORVU3Hr1G040910.1	Barley	mitochondrion	5.07	64.71
Solyc01g097950.2.1	Tomato	cytosol	48.16	64.71
TraesCS2A01G300600.1	Wheat	cytosol	47.23	62.69
TraesCS2B01G316800.1	Wheat	cytosol	47.23	62.69
VIT_14s0030g01550.t01	Wine grape	cytosol	49.31	62.57
Solyc01g097930.2.1	Tomato	cytosol	46.31	62.23
Solyc01g097920.2.1	Tomato	cytosol, plastid	50.46	61.52
Os12t0625000-01	Rice	plasma membrane	49.08	61.38
HORVU2Hr1G074630.2	Barley	cytosol	39.86	59.66
TraesCS2D01G298600.2	Wheat	cytosol	47.23	57.26
KXG26295	Sorghum	cytosol	45.39	56.29
Zm00001d003717_P001	Maize	cytosol	45.16	55.68
Bra037682.1-P	Field mustard	plastid	49.77	55.53
Bra004781.1-P	Field mustard	plastid	50.0	54.8
KRG92761	Soybean	cytosol	40.09	52.57
Bra014529.1-P	Field mustard	plastid	49.54	50.95
VIT_14s0030g01490.t01	Wine grape	cytosol	50.92	50.34
Bra040417.1-P	Field mustard	cytosol	36.18	50.32
HORVU5Hr1G015070.1	Barley	extracellular	7.83	50.0
TraesCS5A01G022200.1	Wheat	plastid	49.08	49.77
TraesCS5B01G018700.3	Wheat	plastid	49.77	49.2
HORVU5Hr1G005980.2	Barley	plastid	49.31	48.97
Bra007604.1-P	Field mustard	mitochondrion	40.09	47.28
Bra014436.1-P	Field mustard	mitochondrion	39.63	46.74
Bra036448.1-P	Field mustard	plastid	40.78	45.04
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	19.12	44.38
HORVU1Hr1G031220.3	Barley	plastid	27.65	29.48
Bra038025.1-P	Field mustard	plastid	24.42	24.54

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	Gene3D:3.40.50.1100	EnsemblPlantsGene:Bra020605
EnsemblPlants:Bra020605.1	EnsemblPlants:Bra020605.1-P	InterPro:CysK	InterPro:Cys_synth	GO:GO:0003674	GO:GO:0003735
GO:GO:0003824	GO:GO:0004124	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	GO:GO:0019538
UniProt:M4DVR1	HAMAP:MF_00545	InterPro:P-phosphate_BS	PFAM:PD006052	PFAM:PF00291	PFAM:PF01282
InterPro:PLP-dep	ScanProsite:PS00529	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF97	InterPro:Ribosomal_L23/L15e_core_dom_sf
InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS	SUPFAM:SSF53686	SUPFAM:SSF54189	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI00025468D8	SEG:seg	:	:	:

Description

AT5G28020 (E=3e-148) CYSD2, ATCYSD2 | CYSD2 (CYSTEINE SYNTHASE D2); catalytic/ cysteine synthase/ pyridoxal phosphate binding

Coordinates

chrA02:+:24257567..24262120

Molecular Weight (calculated)

47327.2 Da

IEP (calculated)

10.205

GRAVY (calculated)

-0.162

Length

434 amino acids

Sequence
(BLAST)

001: MSEKAVTIRT RKFMTNRLLS RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFVF KFRTHFGGGK SSGFGLIYDN VESAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKLIGNTP MVYLNKVVDG CLARIAAKLE MMEPCSSVKD RIAYSMIKDA EDKGLITPGK STLIEPTADN TGIGLACIGA
201: ARGYKVILLM PSTMSLERRI ILKALGAELH LTDVKIGIQG MLEKTEEILS KTPGGFVPQQ FENPANPEIH YRTTGPEIWR DSAGKVDILV AGVGTGGTIS
301: GVGKFLKEMN KDIKVYAVEP AESPVLSGGE RGPHLIQGIG SGIIPTNLEL SIVDEIIQVK GEEAIEPAKL LALKEGLLVG ISSGAAAAAA LKVAKRPENA
401: GKLIVVVFPS GGERYLSTKL FDSVRFEAEN LPTE

Best Arabidopsis Sequence Match ( AT5G28020.2 )
(BLAST)

001: MEDRCLIKND ITELIGNTPM VYLNNVVDGC VARIAAKLEM MEPCSSVKDR IAYSMIKDAE DKGLITPGKS TLIEPTAGNT GIGLACMGAA RGYKVILVMP
101: STMSLERRII LRALGAELHL SDQRIGLKGM LEKTEAILSK TPGGYIPQQF ENPANPEIHY RTTGPEIWRD SAGKVDILVA GVGTGGTATG VGKFLKEQNK
201: DIKVCVVEPV ESPVLSGGQP GPHLIQGIGS GIVPFNLDLT IVDEIIQVAG EEAIETAKLL ALKEGLLVGI SSGAAAAAAL KVAKRPENAG KLIVVVFPSG
301: GERYLSTKLF DSIRYEAENL PIE

Arabidopsis Description

CYSD2Bifunctional L-3-cyanoalanine synthase/cysteine synthase D2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.