Factsheet for Solyc01g097940.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
plastid 4
mitochondrion 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plastid

nucleus: 30535734
plasma membrane: 30535734

gfp PMID: 30535734 doi

D Liu, J Lu, H Li, J Wang, Y Pei

College of Life Science, Shanxi University, Taiyuan, 030006, China., College of Life Science, Shanxi University, Taiyuan, 030006, China. peiyanxi@sxu.edu.cn., Scientific Instrument Center, Shanxi University, Taiyuan, 030006, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g013560.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	Solyc12g013560.1.1	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G040910.1	Barley	mitochondrion	10.71	61.76
Solyc01g097950.2.1	Tomato	cytosol	86.22	52.32
Solyc01g097930.2.1	Tomato	cytosol	85.71	52.01
HORVU5Hr1G015070.1	Barley	extracellular	16.84	48.53
Bra009985.1-P	Field mustard	cytosol	66.84	47.29
Solyc01g097920.2.1	Tomato	cytosol, plastid	80.61	44.38
CDX86187	Canola	cytosol	66.33	42.76
CDX80680	Canola	cytosol	66.33	42.76
KRH13764	Soybean	cytosol	68.88	42.06
CDY50768	Canola	cytosol	68.37	41.74
VIT_14s0030g01520.t01	Wine grape	cytosol	68.37	41.49
CDY41911	Canola	cytosol	67.86	41.43
KRH34037	Soybean	cytosol	67.35	40.87
KRG92757	Soybean	cytosol	67.35	40.87
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	66.84	40.31
CDY52498	Canola	cytosol	66.33	40.25
Bra036115.1-P	Field mustard	cytosol	65.82	39.94
CDY00007	Canola	cytosol	65.82	39.94
AT5G28030.2	Thale cress	cytosol	65.82	39.94
CDY05586	Canola	cytosol	65.82	39.94
GSMUA_Achr9P25760_001	Banana	cytosol	65.82	39.81
KRH34052	Soybean	cytosol	65.82	39.81
CDY69239	Canola	cytosol	64.8	39.56
CDX74160	Canola	cytosol	64.8	39.56
CDY41913	Canola	cytosol	61.22	39.47
Solyc09g082060.2.1	Tomato	cytosol, nucleus, plastid	65.31	39.38
Zm00001d031136_P003	Maize	plasma membrane	65.31	39.38
AT5G28020.1	Thale cress	cytosol	64.8	39.32
CDY19703	Canola	cytosol	64.8	39.32
GSMUA_Achr11P...	Banana	cytosol	64.8	39.2
KXG24064	Sorghum	cytosol	64.8	39.08
AT3G04940.1	Thale cress	cytosol	64.29	38.89
VIT_14s0030g01550.t01	Wine grape	cytosol	67.86	38.89
TraesCS5D01G027600.1	Wheat	cytosol, golgi	64.29	38.77
TraesCS2B01G316800.1	Wheat	cytosol	63.27	37.92
TraesCS2A01G300600.1	Wheat	cytosol	63.27	37.92
GSMUA_Achr4P21350_001	Banana	cytosol	62.76	37.85
Bra036114.1-P	Field mustard	cytosol	64.8	37.13
KRH43690	Soybean	cytosol	43.88	36.91
CDY19702	Canola	mitochondrion	65.82	36.75
Os12t0625000-01	Rice	plasma membrane	64.29	36.31
CDY00008	Canola	mitochondrion	64.29	35.9
TraesCS2D01G298600.2	Wheat	cytosol	63.78	34.92
Zm00001d003717_P001	Maize	cytosol	62.24	34.66
KXG26295	Sorghum	cytosol	60.71	34.0
Solyc08g014340.2.1	Tomato	plastid	66.84	33.94
HORVU2Hr1G074630.2	Barley	cytosol	50.0	33.79
Solyc10g012370.2.1	Tomato	mitochondrion	57.14	31.91
Bra001131.1-P	Field mustard	mitochondrion	64.29	31.5
KRG92761	Soybean	cytosol	52.55	31.12
VIT_14s0030g01490.t01	Wine grape	cytosol	67.86	30.3
Solyc01g094790.2.1	Tomato	plastid	55.1	30.25
Bra020605.1-P	Field mustard	mitochondrion	65.82	29.72
TraesCS5A01G022200.1	Wheat	plastid	64.29	29.44
TraesCS5B01G018700.3	Wheat	plastid	64.8	28.93
HORVU5Hr1G005980.2	Barley	plastid	64.29	28.83
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	25.51	26.74
Bra040417.1-P	Field mustard	cytosol	33.16	20.83
HORVU1Hr1G031220.3	Barley	plastid	40.31	19.41
Solyc04g058120.1.1	Tomato	mitochondrion	7.14	15.38
Solyc07g065470.2.1	Tomato	peroxisome, plasma membrane	32.65	15.2
CDY41915	Canola	cytosol	1.02	3.23

Protein Annotations

Gene3D:3.40.50.1100	MapMan:50.2.5	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0030170	UniProt:K4B0I1
InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF97
SUPFAM:SSF53686	EnsemblPlantsGene:Solyc01g097940.1	EnsemblPlants:Solyc01g097940.1.1	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI00027683E2	SEG:seg

Description

No Description!

Coordinates

chr1:+:88609778..88610782

Molecular Weight (calculated)

20918.5 Da

IEP (calculated)

7.254

GRAVY (calculated)

0.067

Length

196 amino acids

Sequence
(BLAST)

001: MQLIGSTPMV YLNKIAEGCA AQIAAKMETM QPCSSIKDRV AWSMIKDAED RGLITPGKTV LIEISSGNTG IGLASIAAAR GYKLVIVMGA KYSIERRIVL
101: KALGAELYIT DPAKGTDGVL QKAQEIIDTT PNSYVLHQSE NPANPKVGIS SGAAAAAAVK VAKRPENIIM ASSGERYLST VLFDSIREEV ENMIFE

Best Arabidopsis Sequence Match ( AT2G43750.1 )
(BLAST)

001: MAATSSSAFL LNPLTSRHRP FKYSPELSSL SLSSRKAAAF DVSSAAFTLK RQSRSDVVCK AVSIKPEAGV EGLNIADNAA QLIGKTPMVY LNNVVKGCVA
101: SVAAKLEIME PCCSVKDRIG YSMITDAEEK GLITPGKSVL VESTSGNTGI GLAFIAASKG YKLILTMPAS MSLERRVLLR AFGAELVLTE PAKGMTGAIQ
201: KAEEILKKTP NSYMLQQFDN PANPKIHYET TGPEIWEDTR GKIDILVAGI GTGGTITGVG RFIKERKPEL KVIGVEPTES AILSGGKPGP HKIQGIGAGF
301: VPKNLDLAIV DEYIAISSEE AIETSKQLAL QEGLLVGISS GAAAAAAIQV AKRPENAGKL IAVVFPSFGE RYLSTQLFQS IREECEQMQP EL

Arabidopsis Description

OASBCysteine synthase [Source:UniProtKB/TrEMBL;Acc:Q0WW95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.