Factsheet for Solyc12g013560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g097920.2.1
Solyc01g097930.2.1
Solyc01g097940.1.1
Solyc01g097950.2.1
Solyc08g014340.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54390.1	Solyc08g014340.2.1	AT2G43750.1	21798944
AT5G54390.1	Solyc01g097920.2.1	AT3G04940.1	21798944
AT5G54390.1	Solyc01g097930.2.1	AT3G04940.1	21798944
AT5G54390.1	Solyc01g097940.1.1	AT3G04940.1	21798944
AT5G54390.1	Solyc01g097950.2.1	AT3G04940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022081	Potato	cytosol	96.08	96.34
VIT_19s0014g03380.t01	Wine grape	cytosol, endoplasmic reticulum	71.02	71.39
KRH26049	Soybean	cytosol	68.41	68.41
KRH55364	Soybean	cytosol	67.36	67.72
CDY48649	Canola	cytosol	64.23	66.13
Bra022717.1-P	Field mustard	cytosol	63.97	65.86
CDY66135	Canola	cytosol	63.71	65.59
AT5G54390.1	Thale cress	cytosol	63.19	64.88
GSMUA_Achr8P07520_001	Banana	cytosol	64.23	64.74
Bra002992.1-P	Field mustard	cytosol	62.66	64.17
CDY18326	Canola	cytosol	62.66	64.0
CDY42446	Canola	cytosol	62.4	63.9
GSMUA_Achr11P...	Banana	cytosol	63.71	62.24
HORVU6Hr1G087990.4	Barley	mitochondrion	58.49	57.88
Solyc02g078860.2.1	Tomato	plastid	65.27	55.8
OQU85910	Sorghum	mitochondrion	61.36	52.57
TraesCS6B01G411500.1	Wheat	plastid	63.19	51.6
TraesCS6D01G358000.1	Wheat	plastid	62.92	51.39
TraesCS6A01G373800.1	Wheat	plastid	62.92	51.17
Zm00001d051988_P001	Maize	mitochondrion	57.44	49.22
Os02t0805500-01	Rice	cytosol	61.1	49.06
Solyc05g056490.2.1	Tomato	plastid	39.69	43.55
Solyc02g079250.2.1	Tomato	mitochondrion, plastid	27.15	28.81
Solyc02g079270.2.1	Tomato	extracellular	30.29	27.82

Protein Annotations

KEGG:00920+3.1.3.7	Gene3D:3.30.540.10	Gene3D:3.40.190.80	MapMan:35.1	InterPro:Bisphos_HAL2	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0006790	GO:GO:0008150	GO:GO:0008152	GO:GO:0008441
GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0046854	InterPro:Inositol_monoP_metal-BS	InterPro:Inositol_monophosphatase-like
InterPro:Inositol_monophosphatase_CS	UniProt:K4DCP1	PFAM:PF00459	ScanProsite:PS00629	ScanProsite:PS00630	PANTHER:PTHR43200
PANTHER:PTHR43200:SF1	SUPFAM:SSF56655	EnsemblPlantsGene:Solyc12g013560.1	EnsemblPlants:Solyc12g013560.1.1	TIGRFAMs:TIGR01330	UniParc:UPI000276A321
SEG:seg	:	:	:	:	:

Description

PAP-specific phosphatase HAL2-like [Source:Projected from Arabidopsis thaliana (AT5G54390) UniProtKB/Swiss-Prot;Acc:Q38945]

Coordinates

chr12:+:4405558..4410928

Molecular Weight (calculated)

41392.2 Da

IEP (calculated)

5.673

GRAVY (calculated)

-0.153

Length

383 amino acids

Sequence
(BLAST)

001: MEKEKYSEEL NVAVRVVHMA CSLCQKVQKG LLGKAFGDDD EVKSKDDDSL VTIADWSVQA TVSWILSNTF GSEFVSIVAE EDVQTLSKPE SAGLLGKVVS
101: TVNECLAQAS RYGLKGPDKI LGPSEILEAI SRCNSKGGPL GRHWVLDPVD GTLGFVRGGQ YAVALALIDN AEVVVGVLGC PNYHMKRDRH NKQQQNHISS
201: EVPVPSPDML EEGCVMYSKK GTGEAWVQPT VYGDGKYEWP NFAKQVRVSP IDDPALATFC EPVERANSNH SFAAGLASSV GLRNKPLRVY SMVKYAAIAQ
301: GDAEIFMKFA RAGYKEKIWD HAAGVLIVQE AGGVVTDAGG RSLDFSKGIY LESLDRGIVA CSGTKLHEKL IGAVYASWES SSL

Best Arabidopsis Sequence Match ( AT5G54390.1 )
(BLAST)

001: MAVDSLETEI DTAVRVVHLA SSLCVKVQEK LHLPNGGHVK SKDDDSPVTV ADFGVQAIVS WVLAEVFGDQ NLSIVAEEDT ETLSEADSLG LLGAVSNAVN
101: EALSEAQNYG LPKPVKPLGS SEILKAISRC NSVGGPKGRH WVLDPVDGTL GFVRGDQYAV ALALIENGKV LLGVLGCPNY PVKKECLSNG CNQAMKTKAV
201: AGSVSKGCVM YAKRGSGQAW MQPLIVGGIP ESATLLKVSS VDDPVLATVC EPVERANSNH LFTAGLANSM GVRKQPMRVY SMVKYAAIAR GDAEVFMKFA
301: QSSYKEKIWD HAAGVVIVEE AGGVVTDAGG RNLDFSKGVY LEGLDRGIIA CSGQVLHEKI IGAVYASWES SSL

Arabidopsis Description

AHLPAP-specific phosphatase HAL2-like [Source:UniProtKB/Swiss-Prot;Acc:Q38945]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.