Factsheet for Solyc01g097930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

cytosol: 30535734
nucleus: 30535734
plasma membrane: 30535734

gfp PMID: 30535734 doi

D Liu, J Lu, H Li, J Wang, Y Pei

College of Life Science, Shanxi University, Taiyuan, 030006, China., College of Life Science, Shanxi University, Taiyuan, 030006, China. peiyanxi@sxu.edu.cn., Scientific Instrument Center, Shanxi University, Taiyuan, 030006, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g013560.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	Solyc12g013560.1.1	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g097940.1.1	Tomato	plasma membrane	52.01	85.71
Solyc01g097950.2.1	Tomato	cytosol	85.45	85.45
Solyc01g097920.2.1	Tomato	cytosol, plastid	80.5	73.03
VIT_14s0030g01520.t01	Wine grape	cytosol	70.59	70.59
KRH13764	Soybean	cytosol	65.63	66.04
GSMUA_Achr11P...	Banana	cytosol	65.33	65.12
CDY50768	Canola	cytosol	64.71	65.11
Bra036115.1-P	Field mustard	cytosol	65.02	65.02
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	65.33	64.92
CDY41911	Canola	cytosol	64.4	64.8
KRH34037	Soybean	cytosol	64.71	64.71
HORVU3Hr1G040910.1	Barley	mitochondrion	6.81	64.71
TraesCS5D01G027600.1	Wheat	cytosol, golgi	65.02	64.62
VIT_14s0030g01550.t01	Wine grape	cytosol	68.11	64.33
KXG24064	Sorghum	cytosol	64.71	64.31
Zm00001d031136_P003	Maize	plasma membrane	64.71	64.31
CDY00007	Canola	cytosol	64.09	64.09
KRG92757	Soybean	cytosol	64.09	64.09
GSMUA_Achr9P25760_001	Banana	cytosol	64.09	63.89
KRH34052	Soybean	cytosol	64.09	63.89
CDX86187	Canola	cytosol	60.06	63.82
CDY52498	Canola	cytosol	63.78	63.78
Solyc09g082060.2.1	Tomato	cytosol, nucleus, plastid	64.09	63.69
Bra009985.1-P	Field mustard	cytosol	54.49	63.54
CDX80680	Canola	cytosol	59.75	63.49
CDY19703	Canola	cytosol	63.47	63.47
CDY05586	Canola	cytosol	63.47	63.47
AT5G28030.2	Thale cress	cytosol	63.47	63.47
GSMUA_Achr4P21350_001	Banana	cytosol	63.78	63.38
CDY69239	Canola	cytosol	62.23	62.62
AT3G04940.1	Thale cress	cytosol	62.54	62.35
CDX74160	Canola	cytosol	61.92	62.31
AT5G28020.1	Thale cress	cytosol	61.92	61.92
TraesCS2B01G316800.1	Wheat	cytosol	61.61	60.86
TraesCS2A01G300600.1	Wheat	cytosol	61.3	60.55
CDY41913	Canola	cytosol	56.35	59.87
CDY19702	Canola	mitochondrion	65.02	59.83
CDY00008	Canola	mitochondrion	64.4	59.26
KRH43690	Soybean	cytosol	42.72	59.23
Os12t0625000-01	Rice	plasma membrane	62.85	58.5
Bra036114.1-P	Field mustard	cytosol	61.92	58.48
HORVU2Hr1G074630.2	Barley	cytosol	52.32	58.28
Zm00001d003717_P001	Maize	cytosol	60.99	55.97
TraesCS2D01G298600.2	Wheat	cytosol	61.92	55.87
KXG26295	Sorghum	cytosol	58.82	54.29
Solyc08g014340.2.1	Tomato	plastid	64.4	53.89
KRG92761	Soybean	cytosol	54.18	52.87
VIT_14s0030g01490.t01	Wine grape	cytosol	70.28	51.71
CDY41915	Canola	cytosol	9.91	51.61
Solyc10g012370.2.1	Tomato	mitochondrion	55.42	51.0
Bra001131.1-P	Field mustard	mitochondrion	62.54	50.5
Solyc01g094790.2.1	Tomato	plastid	55.11	49.86
TraesCS5A01G022200.1	Wheat	plastid	64.71	48.83
TraesCS5B01G018700.3	Wheat	plastid	65.02	47.84
HORVU5Hr1G005980.2	Barley	plastid	64.71	47.83
HORVU5Hr1G015070.1	Barley	extracellular	9.91	47.06
Bra020605.1-P	Field mustard	mitochondrion	62.23	46.31
Bra040417.1-P	Field mustard	cytosol	42.72	44.23
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	24.77	42.78
Solyc04g058120.1.1	Tomato	mitochondrion	11.46	40.66
HORVU1Hr1G031220.3	Barley	plastid	34.37	27.27
Solyc07g065470.2.1	Tomato	peroxisome, plasma membrane	34.37	26.37

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:50.2.5	InterPro:CysK	InterPro:Cys_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	GO:GO:0030170	UniProt:K4B0I0
InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF97
SUPFAM:SSF53686	EnsemblPlantsGene:Solyc01g097930.2	EnsemblPlants:Solyc01g097930.2.1	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI00027683E1	SEG:seg	:	:	:	:

Description

Cysteine synthase [Source:UniProtKB/TrEMBL;Acc:K4B0I0]

Coordinates

chr1:+:88606184..88608306

Molecular Weight (calculated)

34420.9 Da

IEP (calculated)

5.866

GRAVY (calculated)

-0.003

Length

323 amino acids

Sequence
(BLAST)

001: MEEKSHEIAK DVTELIGSTP MVYLNKIAEG CAAQIAAKME TMQPCSSIKD RVAWNMIKDA EDRGIIRPGK TVLLETSSGN TGIGLASIAA ARGYKLVIVM
101: SGSSSIERRI VLKAFGAELY ITDRDKGIPE VLKKAQEIKD TTPNCYFLGQ DKNPANPKIH YDATGPEIWN CTGGKVDIFI AGIGTGGTVS GIGKFLKEKN
201: PEIKVYGLEP TENAFLNGGQ LGPHKIQGIG PGFIPPVLDL SILDGVLQVS SDEAIEMAKL LALKEGLLVG ISSGAAAAAA VQVAKKPENA GKLIVIIMAS
301: SGERYLSTVL FDSIREEVEN MKF

Best Arabidopsis Sequence Match ( AT4G14880.5 )
(BLAST)

001: MASRIAKDVT ELIGNTPLVY LNNVAEGCVG RVAAKLEMME PCSSVKDRIG FSMISDAEKK GLIKPGESVL IEPTSGNTGV GLAFTAAAKG YKLIITMPAS
101: MSTERRIILL AFGVELVLTD PAKGMKGAIA KAEEILAKTP NGYMLQQFEN PANPKIHYET TGPEIWKGTG GKIDGFVSGI GTGGTITGAG KYLKEQNANV
201: KLYGVEPVES AILSGGKPGP HKIQGIGAGF IPSVLNVDLI DEVVQVSSDE SIDMARQLAL KEGLLVGISS GAAAAAAIKL AQRPENAGKL FVAIFPSFGE
301: RYLSTVLFDA TRKEAEAMTF EA

Arabidopsis Description

OASA1Cysteine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P47998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.