CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH26049
KRH55364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	KRH26049	AT5G54390.1	21798944
AT5G28020.1	KRH55364	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43690	Soybean	cytosol	65.42	90.13
KRH34037	Soybean	cytosol	80.37	79.88
KRH34052	Soybean	cytosol	80.37	79.63
KRG92757	Soybean	cytosol	79.44	78.95
VIT_14s0030g01520.t01	Wine grape	cytosol	76.01	75.54
KRG91325	Soybean	cytosol, mitochondrion, nucleus	75.08	74.15
KRH27640	Soybean	cytosol	75.08	74.15
CDY69239	Canola	cytosol	74.14	74.14
GSMUA_Achr9P25760_001	Banana	cytosol	74.45	73.77
AT5G28020.1	Thale cress	cytosol	74.14	73.68
KRG96937	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	74.45	73.54
KRH68699	Soybean	cytosol	74.45	73.54
CDX74160	Canola	cytosol	73.21	73.21
CDY50768	Canola	cytosol	72.59	72.59
GSMUA_Achr11P...	Banana	cytosol	73.21	72.53
Bra036115.1-P	Field mustard	cytosol	72.9	72.45
CDY52498	Canola	cytosol	72.9	72.45
KXG24064	Sorghum	cytosol	73.21	72.31
TraesCS5D01G027600.1	Wheat	cytosol, golgi	72.9	72.0
GSMUA_Achr4P21350_001	Banana	cytosol	72.9	72.0
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	72.9	72.0
Zm00001d031136_P003	Maize	plasma membrane	72.9	72.0
CDY41911	Canola	cytosol	71.96	71.96
CDY05586	Canola	cytosol	72.27	71.83
CDX86187	Canola	cytosol	67.91	71.71
AT5G28030.2	Thale cress	cytosol	71.96	71.52
KRH35519	Soybean	cytosol	67.6	71.15
CDX80680	Canola	cytosol	67.29	71.05
CDY00007	Canola	cytosol	71.34	70.9
VIT_14s0030g01550.t01	Wine grape	cytosol	75.39	70.76
CDY41913	Canola	cytosol	66.98	70.72
AT3G04940.1	Thale cress	cytosol	71.34	70.68
CDY19703	Canola	cytosol	71.03	70.59
HORVU3Hr1G040910.1	Barley	mitochondrion	7.48	70.59
Bra009985.1-P	Field mustard	cytosol	60.75	70.4
KRH77854	Soybean	cytosol	16.2	70.27
Solyc01g097940.1.1	Tomato	plasma membrane	42.06	68.88
Solyc01g097950.2.1	Tomato	cytosol	69.16	68.73
Os12t0625000-01	Rice	plasma membrane	73.83	68.3
CDY19702	Canola	mitochondrion	72.9	66.67
CDY00008	Canola	mitochondrion	71.96	65.81
Solyc01g097920.2.1	Tomato	cytosol, plastid	72.9	65.73
Solyc01g097930.2.1	Tomato	cytosol	66.04	65.63
TraesCS2B01G316800.1	Wheat	cytosol	66.36	65.14
TraesCS2A01G300600.1	Wheat	cytosol	66.04	64.83
Bra036114.1-P	Field mustard	cytosol	68.85	64.62
HORVU2Hr1G074630.2	Barley	cytosol	57.01	63.1
KXG26295	Sorghum	cytosol	68.22	62.57
KRG92761	Soybean	cytosol	64.49	62.54
Zm00001d003717_P001	Maize	cytosol	66.98	61.08
TraesCS2D01G298600.2	Wheat	cytosol	66.98	60.06
Bra001131.1-P	Field mustard	mitochondrion	73.21	58.75
KRH50190	Soybean	nucleus, plastid	70.72	58.35
KRH71273	Soybean	nucleus, plastid	70.41	57.36
HORVU5Hr1G015070.1	Barley	extracellular	12.15	57.35
CDY41915	Canola	cytosol	10.9	56.45
VIT_14s0030g01490.t01	Wine grape	cytosol	75.39	55.13
KRH74905	Soybean	cytosol	13.71	55.0
TraesCS5A01G022200.1	Wheat	plastid	72.27	54.21
KRG94935	Soybean	nucleus	61.99	53.64
HORVU5Hr1G005980.2	Barley	plastid	72.9	53.55
TraesCS5B01G018700.3	Wheat	plastid	72.9	53.3
KRH64961	Soybean	nucleus, plastid	61.99	53.21
Bra020605.1-P	Field mustard	mitochondrion	71.34	52.77
KRH40428	Soybean	mitochondrion	59.81	51.47
KRH00797	Soybean	mitochondrion	59.5	51.34
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	28.97	49.73
Bra040417.1-P	Field mustard	cytosol	45.79	47.12
HORVU1Hr1G031220.3	Barley	plastid	39.88	31.45
KRH14231	Soybean	mitochondrion	34.27	25.88
KRH73904	Soybean	cytosol	28.66	21.8

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	EntrezGene:100804065	Gene3D:3.40.50.1100	MapMan:50.2.5	EMBL:ACUP02009786
InterPro:CysK	InterPro:Cys_synth	EnsemblPlantsGene:GLYMA_15G262500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006535
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019344	GO:GO:0030170	UniProt:I1MJD2	EnsemblPlants:KRH13764	ProteinID:KRH13764	ProteinID:KRH13764.1
ProteinID:KRH13765.1	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314
PANTHER:PTHR10314:SF97	MetaCyc:PWY-6936	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI000233BE71	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:49519743..49527045

Molecular Weight (calculated)

33932.3 Da

IEP (calculated)

5.119

GRAVY (calculated)

0.072

Length

321 amino acids

Sequence
(BLAST)

001: MECAIKQDVT ELIGNTPMVY LNKVVEGCVA RIAAKLESME PCSSVKDRLA LSMIKDAEDK GLITPGKTVL VETTSGNTGI GLAFIAALKG YRLILAMPAS
101: MSLERRVVLR ALGAELHLTD PAKGFKGSLQ KAEELLRETP DAFMPHQFEN PANPKIHYET TGPEIWTDSG GKVDALVAGI GTGGTITGAG KFLKERNPKI
201: KVYGVEPVES AVLSGGQPGG HLIQGIGAGI VPAVLDVNLL DEILQVSSEE AIETAKLLAL KEGLLVGISS GAAAAAAIKL GKRPENADKL IVVVFPSSGE
301: RYLSSPLFES IRQEAEQMTF D

Best Arabidopsis Sequence Match ( AT5G28020.2 )
(BLAST)

001: MEDRCLIKND ITELIGNTPM VYLNNVVDGC VARIAAKLEM MEPCSSVKDR IAYSMIKDAE DKGLITPGKS TLIEPTAGNT GIGLACMGAA RGYKVILVMP
101: STMSLERRII LRALGAELHL SDQRIGLKGM LEKTEAILSK TPGGYIPQQF ENPANPEIHY RTTGPEIWRD SAGKVDILVA GVGTGGTATG VGKFLKEQNK
201: DIKVCVVEPV ESPVLSGGQP GPHLIQGIGS GIVPFNLDLT IVDEIIQVAG EEAIETAKLL ALKEGLLVGI SSGAAAAAAL KVAKRPENAG KLIVVVFPSG
301: GERYLSTKLF DSIRYEAENL PIE

Arabidopsis Description

CYSD2Bifunctional L-3-cyanoalanine synthase/cysteine synthase D2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.