CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98542
KRH00049
KRH05125
KRH14245
KRH46343
KRH50190
KRH71273
KRH73892

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59760.1	KRG98542	AT3G13110.1	11168407
AT3G59760.1	KRH00049	AT3G13110.1	11168407
AT3G59760.1	KRH05125	AT3G13110.1	11168407
AT3G59760.1	KRH14245	AT3G13110.1	11168407
AT3G59760.1	KRH46343	AT3G13110.1	11168407
AT3G59760.1	KRH73892	AT3G13110.1	11168407
AT3G59760.1	KRG98542	AT3G13110.1	12063244
AT3G59760.1	KRH00049	AT3G13110.1	12063244
AT3G59760.1	KRH05125	AT3G13110.1	12063244
AT3G59760.1	KRH14245	AT3G13110.1	12063244
AT3G59760.1	KRH46343	AT3G13110.1	12063244
AT3G59760.1	KRH73892	AT3G13110.1	12063244
AT3G59760.1	KRH50190	AT3G59760.1	11168407
AT3G59760.1	KRH71273	AT3G59760.1	11168407

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71273	Soybean	nucleus, plastid	96.14	94.92
VIT_05s0094g00780.t01	Wine grape	plastid	82.01	83.51
GSMUA_Achr5P17120_001	Banana	plastid	77.64	78.65
PGSC0003DMT400059624	Potato	cytosol, plastid	76.61	77.2
Solyc08g014340.2.1	Tomato	plastid	76.61	77.2
GSMUA_Achr9P02430_001	Banana	plastid	75.06	76.84
CDY23400	Canola	plastid	75.32	75.32
CDY30438	Canola	plastid	75.32	75.32
Bra037682.1-P	Field mustard	plastid	75.06	75.06
CDY17914	Canola	plastid	75.06	74.49
CDX79804	Canola	plastid	75.32	73.99
AT2G43750.1	Thale cress	plastid	74.55	73.98
Os01t0978100-01	Rice	plastid	74.81	73.86
KRH27640	Soybean	cytosol	61.7	73.85
KRG91325	Soybean	cytosol, mitochondrion, nucleus	61.7	73.85
KRH68699	Soybean	cytosol	61.44	73.54
KRG96937	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	61.44	73.54
Bra004781.1-P	Field mustard	plastid	74.81	73.48
Zm00001d040235_P005	Maize	plastid	73.26	71.97
TraesCS3B01G102500.1	Wheat	golgi, plastid	72.49	71.94
TraesCS3A01G087100.1	Wheat	plastid	71.72	71.72
TraesCS3D01G087300.1	Wheat	plastid	72.24	71.68
Zm00001d008379_P001	Maize	plastid	73.01	71.36
EES02674	Sorghum	plastid	73.26	70.9
KRH13764	Soybean	cytosol	58.35	70.72
KRH77854	Soybean	cytosol	13.11	68.92
KRG92757	Soybean	cytosol	56.56	68.11
KRH34052	Soybean	cytosol	56.56	67.9
KRH35519	Soybean	cytosol	53.21	67.87
CDY45790	Canola	plastid	74.29	67.68
Bra014529.1-P	Field mustard	plastid	73.01	67.3
KRH34037	Soybean	cytosol	55.78	67.18
CDX89032	Canola	plastid	73.78	66.9
AT3G59760.1	Thale cress	plastid	74.29	66.74
KRH43690	Soybean	cytosol	39.33	65.67
KRH74905	Soybean	cytosol	13.37	65.0
KRH64961	Soybean	nucleus, plastid	56.3	58.56
KRG94935	Soybean	nucleus	55.78	58.49
KRG92761	Soybean	cytosol	46.27	54.38
KRH40428	Soybean	mitochondrion	51.93	54.16
KRH00797	Soybean	mitochondrion	51.67	54.03
KRH14231	Soybean	mitochondrion	27.25	24.94
KRH73904	Soybean	cytosol	21.85	20.14

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	UniProt:A0A0R0J5W4	EMBL:ACUP02004667
InterPro:CysK	InterPro:Cys_synth	EnsemblPlantsGene:GLYMA_07G206800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124
GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019344	EnsemblPlants:KRH50190	ProteinID:KRH50190	ProteinID:KRH50190.1	InterPro:P-phosphate_BS
PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF160	MetaCyc:PWY-6936
SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0001B6398D	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:37601997..37609493

Molecular Weight (calculated)

41329.1 Da

IEP (calculated)

8.044

GRAVY (calculated)

-0.033

Length

389 amino acids

Sequence
(BLAST)

001: MASASLINSL TCSSRAPTQH CSTFTRTTAA TSLRQFNSHC RRPLATRISP PSTVVCKAVS VKPQTEIEGL NIAEDVTQLI GKTPMVYLNN IVKGSVANIA
101: AKLEIMEPCC SVKDRIGFSM INDAEQRGAI TPGKSILVEP TSGNTGIGLA FIAASRGYKL ILTMPASMSL ERRVLLKAFG AELVLTDAAK GMNGAVQKAE
201: EILKSTPNAY MLQQFDNPSN PKIHYETTGP EIWEDTRGKI DILVAGIGTG GTVSGVGQFL KQQNPKIQVI GVEPLESNIL TGGKPGPHKI QGIGAGFVPR
301: NLDQDVLDEV IAISSDEAVE TAKQLALQEG LLVGISSGAA AAAALKVGKR PENAGKLIGV VFPSFGERYL STILFQSIRE ECEKMQPEP

Best Arabidopsis Sequence Match ( AT2G43750.2 )
(BLAST)

001: MAATSSSAFL LNPLTSRHRP FKYSPELSSL SLSSRKAAAF DVSSAAFTLK RQSRSDVVCK AVSIKPEAGV EGLNIADNAA QLIGKTPMVY LNNVVKGCVA
101: SVAAKLEIME PCCSVKDRIG YSMITDAEEK GLITPGKSVL VESTSGNTGI GLAFIAASKG YKLILTMPAS MSLERRVLLR AFGAELVLTE PAKGMTGAIQ
201: KAEEILKKTP NSYMLQQFDN PANPKIHYET TGPEIWEDTR GKIDILVAGI GTGGTITGVG RFIKERKPEL KVIGVEPTES AILSGGKPGP HKIQGIGAGF
301: VPKNLDLAIV DEYIAISSEE AIETSKQLAL QEGLLVGISS GAAAAAAIQV AKRPENAGKL IAVVFPSFGE RYLSTQLFQS IREECEQMQP EL

Arabidopsis Description

OASBCysteine synthase [Source:UniProtKB/TrEMBL;Acc:Q0WW95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.