CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH56614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03630.1	KRG93305	AT3G27960.1	21798944
AT3G03630.1	KRH56614	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94935	Soybean	nucleus	92.51	93.26
KRH77854	Soybean	cytosol	13.9	70.27
VIT_08s0056g00820.t01	Wine grape	plastid	72.46	69.49
CDY29946	Canola	plastid	70.59	67.35
Bra036448.1-P	Field mustard	plastid	70.32	66.92
CDY21176	Canola	plastid	70.32	66.92
AT3G03630.1	Thale cress	plastid	70.05	64.85
TraesCS3D01G332100.1	Wheat	plastid	65.24	64.38
TraesCS3A01G338600.3	Wheat	plastid	64.97	64.12
TraesCS3B01G370200.3	Wheat	plastid	64.17	63.66
HORVU3Hr1G079890.1	Barley	plastid	65.51	62.82
Os01t0814800-01	Rice	plastid	65.24	62.24
KRH13764	Soybean	cytosol	53.21	61.99
EES03791	Sorghum	plastid	63.37	61.72
KRH27640	Soybean	cytosol	53.48	61.54
KRG96937	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	53.21	61.23
KRG91325	Soybean	cytosol, mitochondrion, nucleus	52.94	60.92
KRH68699	Soybean	cytosol	52.94	60.92
KRH34037	Soybean	cytosol	52.41	60.68
KRH74905	Soybean	cytosol	12.57	58.75
KRG92757	Soybean	cytosol	50.53	58.51
KRH34052	Soybean	cytosol	50.27	58.02
GSMUA_Achr8P00260_001	Banana	mitochondrion	67.91	57.99
KRH35519	Soybean	cytosol	47.06	57.7
KRH43690	Soybean	cytosol	35.56	57.08
KRH50190	Soybean	nucleus, plastid	58.56	56.3
KRH71273	Soybean	nucleus, plastid	57.75	54.82
KRG92761	Soybean	cytosol	44.38	50.15
KRH40428	Soybean	mitochondrion	49.73	49.87
KRH00797	Soybean	mitochondrion	49.47	49.73
Zm00001d043101_P001	Maize	plastid	24.33	46.91
KRH14231	Soybean	mitochondrion	29.14	25.65
KRH73904	Soybean	cytosol	22.99	20.38

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:50.2.5	EMBL:ACUP02001302	InterPro:CysK
InterPro:Cys_synth	EnsemblPlantsGene:GLYMA_03G006700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344
GO:GO:0030170	UniProt:K7KBZ4	EnsemblPlants:KRH64961	ProteinID:KRH64961	ProteinID:KRH64961.1	InterPro:P-phosphate_BS
PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF90	MetaCyc:PWY-6936
SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000295CF1B	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:612986..618351

Molecular Weight (calculated)

40220.7 Da

IEP (calculated)

8.192

GRAVY (calculated)

0.033

Length

374 amino acids

Sequence
(BLAST)

001: MRMALSSSSS PPLLPFDLQR HRLVSLKPYT RSRSSQSQHT VTVTVTAAKA KASSATPLVY STRQGFDTVN IAEDVTQLIG NTPMVYLNKV TEGCVANIAA
101: KLESMEPCRS VKDRIGYSML SDAEEIGAIS PGKTILVEPT TGNTGLGIAF VAATKGYKLI VTMPASVNVE RRILLRAFGA EVILTDAEKG LKGAVDKAEE
201: IVHSTNNAYM FRQFDNMTNT KIHFETTGPE IWEDTMGNVD ILVAGIGTGG TVTGTGQYLK MMNKNIKVVG VEPADRSVVS GDSPGFMPSI LDVKLLDEVI
301: KVTNVEAVEM ARRLALKEGL LVGISSGAAA AAAINLARRP ENSGKLIVVI FPSFGERYIS TALFHSIYEE VQKM

Best Arabidopsis Sequence Match ( AT3G03630.1 )
(BLAST)

001: MAFASPSLRL LPQSPLGRIT SKLHRFSTAK LSLFSFHHDS SSSLAVRTPV SSFVVGAISG KSSTGTKSKS KTKRKPPPPP PVTTVAEEQH IAESETVNIA
101: EDVTQLIGST PMVYLNRVTD GCLADIAAKL ESMEPCRSVK DRIGLSMINE AENSGAITPR KTVLVEPTTG NTGLGIAFVA AAKGYKLIVT MPASINIERR
201: MLLRALGAEI VLTNPEKGLK GAVDKAKEIV LKTKNAYMFQ QFDNTANTKI HFETTGPEIW EDTMGNVDIF VAGIGTGGTV TGTGGFLKMM NKDIKVVGVE
301: PSERSVISGD NPGYLPGILD VKLLDEVFKV SNGEAIEMAR RLALEEGLLV GISSGAAAVA AVSLAKRAEN AGKLITVLFP SHGERYITTA LFSSINREVQ
401: EMRY

Arabidopsis Description

CS26Probable S-sulfocysteine synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22682]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.