CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68699	Soybean	cytosol	96.31	96.31
KRH27640	Soybean	cytosol	88.92	88.92
KRG91325	Soybean	cytosol, mitochondrion, nucleus	87.08	87.08
KRH77854	Soybean	cytosol	19.38	85.14
GSMUA_Achr4P21350_001	Banana	cytosol	83.69	83.69
GSMUA_Achr9P25760_001	Banana	cytosol	82.77	83.02
KXG24064	Sorghum	cytosol	82.77	82.77
Zm00001d031136_P003	Maize	plasma membrane	82.46	82.46
GSMUA_Achr11P...	Banana	cytosol	82.15	82.41
KRH35519	Soybean	cytosol	75.69	80.66
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	80.62	80.62
TraesCS5D01G027600.1	Wheat	cytosol, golgi	80.31	80.31
HORVU3Hr1G040910.1	Barley	mitochondrion	8.0	76.47
Os12t0625000-01	Rice	plasma membrane	80.62	75.5
KRH13764	Soybean	cytosol	73.54	74.45
TraesCS2B01G316800.1	Wheat	cytosol	74.77	74.31
KRG92757	Soybean	cytosol	73.23	73.68
TraesCS2A01G300600.1	Wheat	cytosol	73.85	73.39
KRH34037	Soybean	cytosol	71.69	72.14
KRH34052	Soybean	cytosol	71.69	71.91
HORVU2Hr1G074630.2	Barley	cytosol	63.69	71.38
KRH43690	Soybean	cytosol	49.54	69.1
TraesCS2D01G298600.2	Wheat	cytosol	74.46	67.6
KXG26295	Sorghum	cytosol	72.62	67.43
Zm00001d003717_P001	Maize	cytosol	72.92	67.33
HORVU5Hr1G015070.1	Barley	extracellular	13.23	63.24
KRH50190	Soybean	nucleus, plastid	73.54	61.44
KRH71273	Soybean	nucleus, plastid	73.85	60.91
TraesCS5A01G022200.1	Wheat	plastid	80.0	60.75
KRH74905	Soybean	cytosol	14.77	60.0
HORVU5Hr1G005980.2	Barley	plastid	80.0	59.5
TraesCS5B01G018700.3	Wheat	plastid	80.0	59.23
KRG92761	Soybean	cytosol	59.08	58.01
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	32.31	56.15
KRH40428	Soybean	mitochondrion	62.46	54.42
KRH00797	Soybean	mitochondrion	62.15	54.3
KRG94935	Soybean	nucleus	61.23	53.64
KRH64961	Soybean	nucleus, plastid	61.23	53.21
VIT_14s0030g01560.t01	Wine grape	endoplasmic reticulum, extracellular	89.23	41.37
HORVU1Hr1G031220.3	Barley	plastid	44.92	35.87
KRH14231	Soybean	mitochondrion	35.08	26.82
KRH73904	Soybean	cytosol	28.31	21.8

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	EMBL:ACUP02012169	InterPro:CysK
InterPro:Cys_synth	EnsemblPlantsGene:GLYMA_19G242300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344
GO:GO:0030170	UniProt:I1NC67	EnsemblPlants:KRG96937	ProteinID:KRG96937	ProteinID:KRG96937.1	InterPro:P-phosphate_BS
PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF101	MetaCyc:PWY-6936
SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000233EA47	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:49007516..49012098

Molecular Weight (calculated)

34314.7 Da

IEP (calculated)

5.296

GRAVY (calculated)

0.034

Length

325 amino acids

Sequence
(BLAST)

001: MAAEKSNIAK DVTELIGKTP LVYLNHIVDG CVAKVAAKLE MMEPCSSVKD RIGYSMIVDA EEKGLITPGE SVLIEPTSGN TGIGLAFMAA AKGYKLIITM
101: PSSMSLERRT ILRAFGAELV LTDPAKGMKG AVQKAEEIRD KTPNSYMLQQ FENPANPKVH YETTGPEIWK GSSGKVDALV SGIGTGGTVT GAGKYLKEQN
201: PDIKLYGIEP VESPILSGGK PGPHKIQGIG AGFIPGVLDV DLLDEVVQIS SEEAIETAKL LALKEGLLVG ISSGAAAAAA VKIAKRPENA GKLIVAVFPS
301: FGERYLSSVL FESVKREAES LVFEP

Best Arabidopsis Sequence Match ( AT4G14880.1 )
(BLAST)

001: MASRIAKDVT ELIGNTPLVY LNNVAEGCVG RVAAKLEMME PCSSVKDRIG FSMISDAEKK GLIKPGESVL IEPTSGNTGV GLAFTAAAKG YKLIITMPAS
101: MSTERRIILL AFGVELVLTD PAKGMKGAIA KAEEILAKTP NGYMLQQFEN PANPKIHYET TGPEIWKGTG GKIDGFVSGI GTGGTITGAG KYLKEQNANV
201: KLYGVEPVES AILSGGKPGP HKIQGIGAGF IPSVLNVDLI DEVVQVSSDE SIDMARQLAL KEGLLVGISS GAAAAAAIKL AQRPENAGKL FVAIFPSFGE
301: RYLSTVLFDA TRKEAEAMTF EA

Arabidopsis Description

OASA1Cysteine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P47998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.