Factsheet for TraesCS5A01G022200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22736107
golgi: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G373800.1
TraesCS6B01G411500.1
TraesCS6D01G358000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	TraesCS6A01G373800.1	AT5G54390.1	21798944
AT5G28020.1	TraesCS6B01G411500.1	AT5G54390.1	21798944
AT5G28020.1	TraesCS6D01G358000.1	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G027600.1	Wheat	cytosol, golgi	75.0	98.77
Zm00001d031136_P003	Maize	plasma membrane	68.93	90.77
KXG24064	Sorghum	cytosol	68.93	90.77
Os12t0625000-01	Rice	plasma membrane	71.03	87.61
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	65.19	85.85
TraesCS5B01G018700.3	Wheat	plastid	87.62	85.42
HORVU5Hr1G005980.2	Barley	plastid	85.51	83.75
Solyc09g082060.2.1	Tomato	cytosol, nucleus, plastid	63.32	83.38
PGSC0003DMT400082113	Potato	cytosol	63.08	83.08
CDY68436	Canola	cytosol	61.92	82.3
Bra039708.1-P	Field mustard	cytosol	61.92	82.3
AT4G14880.5	Thale cress	cytosol	61.68	81.99
CDY42795	Canola	cytosol	61.22	81.37
KRH68699	Soybean	cytosol	61.68	81.23
KRH27640	Soybean	cytosol	61.45	80.92
Bra036910.1-P	Field mustard	plastid	60.28	80.88
CDY29778	Canola	cytosol, peroxisome, plastid	57.24	80.86
AT3G22460.1	Thale cress	cytosol	46.96	80.4
CDY09039	Canola	cytosol	58.41	80.13
KRG96937	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	60.75	80.0
KRH77854	Soybean	cytosol	13.79	79.73
KRG91325	Soybean	cytosol, mitochondrion, nucleus	58.64	77.23
VIT_14s0030g01520.t01	Wine grape	cytosol	55.61	73.68
KRH35519	Soybean	cytosol	52.34	73.44
TraesCS2A01G300600.1	Wheat	cytosol	55.37	72.48
KRH13764	Soybean	cytosol	54.21	72.27
KRG92757	Soybean	cytosol	53.5	70.9
KRH34052	Soybean	cytosol	53.04	70.06
VIT_14s0030g01550.t01	Wine grape	cytosol	55.84	69.88
KRH43690	Soybean	cytosol	36.92	67.81
AT5G28020.1	Thale cress	cytosol	51.17	67.8
CDY69239	Canola	cytosol	50.7	67.6
CDY41911	Canola	cytosol	50.47	67.29
CDY50768	Canola	cytosol	50.23	66.98
KRH34037	Soybean	cytosol	50.47	66.87
Bra036115.1-P	Field mustard	cytosol	50.47	66.87
Solyc01g097950.2.1	Tomato	cytosol	50.47	66.87
CDX74160	Canola	cytosol	50.0	66.67
CDY52498	Canola	cytosol	50.23	66.56
AT3G04940.1	Thale cress	cytosol	50.0	66.05
CDY05586	Canola	cytosol	49.77	65.94
CDY19703	Canola	cytosol	49.77	65.94
CDY00007	Canola	cytosol	49.77	65.94
CDX86187	Canola	cytosol	46.73	65.79
Bra009985.1-P	Field mustard	cytosol	42.52	65.7
AT5G28030.2	Thale cress	cytosol	49.53	65.63
CDY41913	Canola	cytosol	46.5	65.46
CDX80680	Canola	cytosol	46.26	65.13
Solyc01g097930.2.1	Tomato	cytosol	48.83	64.71
Solyc01g097920.2.1	Tomato	cytosol, plastid	53.5	64.33
Solyc01g097940.1.1	Tomato	plasma membrane	29.44	64.29
CDY19702	Canola	mitochondrion	50.7	61.82
CDY00008	Canola	mitochondrion	50.7	61.82
VIT_14s0030g01540.t01	Wine grape	cytosol, mitochondrion, plastid	55.84	61.28
Bra036114.1-P	Field mustard	cytosol	48.13	60.23
TraesCS3A01G087100.1	Wheat	plastid	54.67	60.15
Bra001131.1-P	Field mustard	mitochondrion	50.7	54.25
KRG92761	Soybean	cytosol	41.82	54.08
VIT_14s0030g01490.t01	Wine grape	cytosol	55.37	53.99
TraesCS5A01G300400.1	Wheat	mitochondrion	46.96	52.89
TraesCS7A01G359800.1	Wheat	cytosol	40.65	51.03
TraesCS3A01G338600.3	Wheat	plastid	45.09	50.92
TraesCS4A01G401700.1	Wheat	cytosol	39.95	49.28
Bra020605.1-P	Field mustard	mitochondrion	49.77	49.08
TraesCS7A01G102800.1	Wheat	cytosol	39.72	48.99
TraesCS7A01G102700.1	Wheat	cytosol	39.49	48.56
CDY41915	Canola	cytosol	7.01	48.39
TraesCS4A01G401600.1	Wheat	cytosol	39.02	47.99
TraesCS6A01G187300.1	Wheat	cytosol	36.92	46.33
Bra040417.1-P	Field mustard	cytosol	32.24	44.23
VIT_14s0030g01560.t01	Wine grape	endoplasmic reticulum, extracellular	65.19	39.8
TraesCS4A01G079100.1	Wheat	plastid	24.53	23.92

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	InterPro:CysK	InterPro:Cys_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep
ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF160	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139
EnsemblPlantsGene:TraesCS5A01G022200	EnsemblPlants:TraesCS5A01G022200.1	InterPro:Trypto_synt_PLP_dependent	TIGR:cd01561	SEG:seg	:

Description

No Description!

Coordinates

chr5A:-:17836380..17840367

Molecular Weight (calculated)

45337.8 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.076

Length

428 amino acids

Sequence
(BLAST)

001: MYAAVLCSFT QGRHDPSTHI RSTSASRLRP GPPAASRCTV DRAFVRSRGP PPNLLHQPLS CIKPRGPRLP PPTSSRTTSS GRHFVQLQLR EDHFAVESLV
101: DGGMGEASSP AIAKDVTELI GNTPLVYLNK VTDGCVGRVA AKLESMEPCS SVKDRIGYSM ITDAEEKGFI VPGKSVLIEP TSGNTGIGLA FMAAAKGYRL
201: VLTMPASMSM ERRIILKAFG AELILTDPLL GMKGAVQKAE ELAAKTPNSY ILQQFENAAN PKIHYETTGP EIWKGTGGKI DGLVSGIGTG GTITGTGKYL
301: QEQNPNIKLY GVEPTESAIL NGGKPGPHKI QGIGAGFIPG VLDVDIIDET IQVSSDESIE MAKSLALKEG LLVGISSGAA AAAAIKVAQR PENAGKLFVV
401: VFPSFGERYL SSVLFHSIKK EAESMVVE

Best Arabidopsis Sequence Match ( AT4G14880.5 )
(BLAST)

001: MASRIAKDVT ELIGNTPLVY LNNVAEGCVG RVAAKLEMME PCSSVKDRIG FSMISDAEKK GLIKPGESVL IEPTSGNTGV GLAFTAAAKG YKLIITMPAS
101: MSTERRIILL AFGVELVLTD PAKGMKGAIA KAEEILAKTP NGYMLQQFEN PANPKIHYET TGPEIWKGTG GKIDGFVSGI GTGGTITGAG KYLKEQNANV
201: KLYGVEPVES AILSGGKPGP HKIQGIGAGF IPSVLNVDLI DEVVQVSSDE SIDMARQLAL KEGLLVGISS GAAAAAAIKL AQRPENAGKL FVAIFPSFGE
301: RYLSTVLFDA TRKEAEAMTF EA

Arabidopsis Description

OASA1Cysteine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P47998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.