Factsheet for PGSC0003DMT400082113

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082060.2.1	Tomato	cytosol, nucleus, plastid	97.85	97.85
Bra039708.1-P	Field mustard	cytosol	85.54	86.34
CDY68436	Canola	cytosol	85.54	86.34
KRH27640	Soybean	cytosol	86.15	86.15
CDY29778	Canola	cytosol, peroxisome, plastid	80.31	86.14
AT4G14880.5	Thale cress	cytosol	84.92	85.71
CDY42795	Canola	cytosol	84.92	85.71
Bra036910.1-P	Field mustard	plastid	83.69	85.27
AT3G22460.1	Thale cress	cytosol	65.54	85.2
KXG24064	Sorghum	cytosol	84.31	84.31
CDY09039	Canola	cytosol	80.92	84.29
KRH77854	Soybean	cytosol	19.08	83.78
Zm00001d031136_P003	Maize	plasma membrane	83.69	83.69
KRG91325	Soybean	cytosol, mitochondrion, nucleus	83.69	83.69
TraesCS5D01G027600.1	Wheat	cytosol, golgi	83.38	83.38
GSMUA_Achr4P21350_001	Banana	cytosol	82.77	82.77
GSMUA_Achr11P...	Banana	cytosol	82.15	82.41
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	81.85	81.85
GSMUA_Achr9P25760_001	Banana	cytosol	81.54	81.79
HORVU3Hr1G040910.1	Barley	mitochondrion	8.31	79.41
KRH35519	Soybean	cytosol	73.23	78.03
Os12t0625000-01	Rice	plasma membrane	81.85	76.66
TraesCS2B01G316800.1	Wheat	cytosol	73.23	72.78
TraesCS2A01G300600.1	Wheat	cytosol	72.62	72.17
HORVU2Hr1G074630.2	Barley	cytosol	62.77	70.34
TraesCS2D01G298600.2	Wheat	cytosol	73.23	66.48
HORVU5Hr1G015070.1	Barley	extracellular	13.85	66.18
KXG26295	Sorghum	cytosol	71.08	66.0
Zm00001d003717_P001	Maize	cytosol	70.77	65.34
TraesCS5A01G022200.1	Wheat	plastid	83.08	63.08
HORVU5Hr1G005980.2	Barley	plastid	83.08	61.78
PGSC0003DMT400059624	Potato	cytosol, plastid	73.23	61.66
TraesCS5B01G018700.3	Wheat	plastid	82.77	61.28
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	33.23	57.75
PGSC0003DMT400016646	Potato	mitochondrion	61.54	56.98
PGSC0003DMT400000156	Potato	mitochondrion	58.15	54.47
PGSC0003DMT400021594	Potato	cytosol	16.0	51.49
PGSC0003DMT400040030	Potato	cytosol	15.69	47.66
PGSC0003DMT400064098	Potato	cytosol	11.38	47.44
PGSC0003DMT400012263	Potato	cytosol	15.38	46.73
PGSC0003DMT400034224	Potato	cytosol	10.15	45.21
PGSC0003DMT400080490	Potato	cytosol, mitochondrion, nucleus, plastid	15.38	37.88
HORVU1Hr1G031220.3	Barley	plastid	45.54	36.36
PGSC0003DMT400057393	Potato	plastid	33.54	25.95

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	ProteinID:AAC25635	ProteinID:AAC25635.1
EMBL:AB029511	EMBL:AF044172	ProteinID:BAB20861	ProteinID:BAB20861.1	InterPro:CysK	InterPro:Cys_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	UniProt:M1D5N3	InterPro:P-phosphate_BS	PFAM:PF00291
EnsemblPlantsGene:PGSC0003DMG400032264	PGSC:PGSC0003DMG400032264	EnsemblPlants:PGSC0003DMT400082113	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314
PANTHER:PTHR10314:SF160	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0002952DF6
SEG:seg	:	:	:	:	:

Description

Cytosolic cysteine synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400032264]

Coordinates

chr9:+:53722269..53727485

Molecular Weight (calculated)

34270.7 Da

IEP (calculated)

5.966

GRAVY (calculated)

0.043

Length

325 amino acids

Sequence
(BLAST)

001: MAGEKIGIAK DVTELIGNTP LVYLNNVVDG CVARVAAKLE SMEPCSSVKD RIGYSMITDA EEKGLIKPGE SVLIEPTSGN TGVGLAFMAA AKGYKLIITM
101: PSSMSLERRI ILRAFGAELV LTDPAKGMKG AISKAEEIKA KTPNSYILQQ FENPANPKIH YETTGPEIWK GSNGKVDALV SGIGTGGTIT GSGKYLREQN
201: PNVKLYGVEP VESAILSGGK PGPHKIQGIG AGFIPGVLEV NLIDDVVQVS SEESIEMAKL LALKEGLLVG ISSGAAAAAA IKVAKRPENA GKLIVVIFPS
301: FGERYLSSVL FETVRREAEN MTVEP

Best Arabidopsis Sequence Match ( AT4G14880.5 )
(BLAST)

001: MASRIAKDVT ELIGNTPLVY LNNVAEGCVG RVAAKLEMME PCSSVKDRIG FSMISDAEKK GLIKPGESVL IEPTSGNTGV GLAFTAAAKG YKLIITMPAS
101: MSTERRIILL AFGVELVLTD PAKGMKGAIA KAEEILAKTP NGYMLQQFEN PANPKIHYET TGPEIWKGTG GKIDGFVSGI GTGGTITGAG KYLKEQNANV
201: KLYGVEPVES AILSGGKPGP HKIQGIGAGF IPSVLNVDLI DEVVQVSSDE SIDMARQLAL KEGLLVGISS GAAAAAAIKL AQRPENAGKL FVAIFPSFGE
301: RYLSTVLFDA TRKEAEAMTF EA

Arabidopsis Description

OASA1Cysteine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P47998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.