Factsheet for PGSC0003DMT400021594

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064098	Potato	cytosol	37.62	48.72
PGSC0003DMT400080490	Potato	cytosol, mitochondrion, nucleus, plastid	56.44	43.18
KRH74905	Soybean	cytosol	19.8	25.0
PGSC0003DMT400000156	Potato	mitochondrion	80.2	23.34
PGSC0003DMT400034224	Potato	cytosol	16.83	23.29
CDY48919	Canola	endoplasmic reticulum	70.3	22.54
PGSC0003DMT400016646	Potato	mitochondrion	73.27	21.08
VIT_15s0046g02300.t01	Wine grape	mitochondrion	75.25	20.49
KRH40428	Soybean	mitochondrion	75.25	20.38
KRH00797	Soybean	mitochondrion	74.26	20.16
GSMUA_Achr5P19480_001	Banana	mitochondrion	69.31	19.5
CDX71737	Canola	mitochondrion	70.3	19.29
Bra007604.1-P	Field mustard	mitochondrion	70.3	19.29
AT3G61440.1	Thale cress	mitochondrion	69.31	19.02
CDX89116	Canola	mitochondrion	69.31	19.02
Bra014436.1-P	Field mustard	mitochondrion	69.31	19.02
CDY43932	Canola	mitochondrion	68.32	18.75
PGSC0003DMT400012263	Potato	cytosol	19.8	18.69
Zm00001d004413_P002	Maize	mitochondrion	70.3	18.59
EES11801	Sorghum	mitochondrion	69.31	18.13
Os04t0165700-01	Rice	mitochondrion	67.33	18.04
TraesCS5B01G300800.1	Wheat	mitochondrion	66.34	17.72
TraesCS5A01G300400.1	Wheat	mitochondrion	66.34	17.63
VIT_04s0044g00250.t01	Wine grape	mitochondrion	62.38	17.55
PGSC0003DMT400040030	Potato	cytosol	17.82	16.82
PGSC0003DMT400082113	Potato	cytosol	51.49	16.0
HORVU2Hr1G000280.3	Barley	golgi, peroxisome, plastid	67.33	14.91
PGSC0003DMT400059624	Potato	cytosol, plastid	52.48	13.73
PGSC0003DMT400057393	Potato	plastid	26.73	6.43
HORVU7Hr1G023500.1	Barley	cytosol	4.95	4.72
CDY68838	Canola	mitochondrion	2.97	2.21

Protein Annotations

KEGG:00460+4.4.1.9	Gene3D:3.40.50.1100	MapMan:35.1	InterPro:CAS	GO:GO:0003674	GO:GO:0003824
GO:GO:0004124	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344
GO:GO:0019499	GO:GO:0050017	UniProt:M1AFD8	EnsemblPlantsGene:PGSC0003DMG400008374	PGSC:PGSC0003DMG400008374	EnsemblPlants:PGSC0003DMT400021594
PANTHER:PTHR10314	PANTHER:PTHR10314:SF80	SUPFAM:SSF53686	TMHMM:TMhelix	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000296D860

Description

Cysteine synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400008374]

Coordinates

chr10:-:59239046..59239512

Molecular Weight (calculated)

11388.3 Da

IEP (calculated)

7.536

GRAVY (calculated)

0.213

Length

101 amino acids

Sequence
(BLAST)

001: MLIEPASGNM GISMAFMTAM KGYKMVLTIP SYTSMERRVT MRAFRADLIL TDPITKGMRG TVHFDTTDPE IWEETLGNVD IFVMGILVLD KILNPKILMS
101: R

Best Arabidopsis Sequence Match ( AT3G61440.2 )
(BLAST)

001: MIADAEKKKL IIPGKTTLIE PTSGNMGISL AFMAAMKGYR IIMTMPSYTS LERRVTMRSF GAELVLTDPA KGMGGTVKKA YDLLDSTPDA FMCQQFANPA
101: NTQIHFDTTG PEIWEDTLGN VDIFVMGIGS GGTVSGVGRY LKSKNPNVKI YGVEPAESNI LNGGKPGPHA ITGNGVGFKP EILDMDVMES VLEVSSEDAI
201: KMARELALKE GLMVGISSGA NTVAAIRLAK MPENKGKLIV TIHASFGERY LSSVLFDELR KEAEEMKPVS VD

Arabidopsis Description

CYSC1Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9S757]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.