CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004413_P002	Maize	mitochondrion	91.19	92.15
Os04t0165700-01	Rice	mitochondrion	88.08	90.19
TraesCS5A01G300400.1	Wheat	mitochondrion	82.9	84.21
TraesCS5B01G300800.1	Wheat	mitochondrion	82.12	83.86
GSMUA_Achr5P19480_001	Banana	mitochondrion	75.91	81.62
HORVU7Hr1G023500.1	Barley	cytosol	21.5	78.3
PGSC0003DMT400000156	Potato	mitochondrion	67.36	74.93
Solyc10g012370.2.1	Tomato	mitochondrion	67.1	73.79
KRH74905	Soybean	cytosol	15.29	73.75
PGSC0003DMT400016646	Potato	mitochondrion	66.06	72.65
Solyc01g094790.2.1	Tomato	plastid	67.1	72.55
Bra007604.1-P	Field mustard	mitochondrion	68.65	72.01
CDX71737	Canola	mitochondrion	68.65	72.01
KRH00797	Soybean	mitochondrion	69.17	71.77
KRH40428	Soybean	mitochondrion	69.17	71.58
CDY43932	Canola	mitochondrion	67.88	71.2
Bra014436.1-P	Field mustard	mitochondrion	67.62	70.92
CDX89116	Canola	mitochondrion	67.62	70.92
AT3G61440.1	Thale cress	mitochondrion	66.84	70.11
VIT_15s0046g02300.t01	Wine grape	mitochondrion	67.1	69.81
PGSC0003DMT400021594	Potato	cytosol	18.13	69.31
CDY48919	Canola	endoplasmic reticulum	56.48	69.21
HORVU2Hr1G000280.3	Barley	golgi, peroxisome, plastid	81.61	69.08
PGSC0003DMT400034224	Potato	cytosol	12.95	68.49
VIT_04s0044g00250.t01	Wine grape	mitochondrion	62.95	67.69
PGSC0003DMT400064098	Potato	cytosol	12.69	62.82
KXG24064	Sorghum	cytosol	52.07	61.85
PGSC0003DMT400040030	Potato	cytosol	16.84	60.75
PGSC0003DMT400012263	Potato	cytosol	16.58	59.81
Solyc04g058120.1.1	Tomato	mitochondrion	13.73	58.24
KXG26295	Sorghum	cytosol	50.52	55.71
EES02674	Sorghum	plastid	52.85	50.75
KXG19307	Sorghum	cytosol	45.6	50.14
KXG19309	Sorghum	cytosol	44.56	49.71
KXG19308	Sorghum	cytosol	44.56	49.28
EES03791	Sorghum	plastid	46.63	46.88
OQU75833	Sorghum	cytosol	29.53	46.53
EES04772	Sorghum	cytosol	40.67	46.04
PGSC0003DMT400080490	Potato	cytosol, mitochondrion, nucleus, plastid	15.03	43.94
OQU75837	Sorghum	cytosol	28.76	41.89
CDY68838	Canola	mitochondrion	13.47	38.24
EER95270	Sorghum	plastid	28.24	24.01

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00460+4.4.1.9	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:50.2.5	EntrezGene:8066013
UniProt:C5YC80	InterPro:CAS	InterPro:CysK	InterPro:Cys_synth	EnsemblPlants:EES11801	ProteinID:EES11801
ProteinID:EES11801.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006535
GO:GO:0006955	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009056
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009653	GO:GO:0009987	GO:GO:0016740
GO:GO:0019344	GO:GO:0019499	GO:GO:0019500	GO:GO:0030154	GO:GO:0030170	GO:GO:0050017
GO:GO:0080147	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314
PANTHER:PTHR10314:SF80	MetaCyc:PWY-6936	EnsemblPlantsGene:SORBI_3006G016900	SUPFAM:SSF53686	unigene:Sbi.14102	TIGRFAMs:TIGR01136
TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0001A8721E	RefSeq:XP_002447473.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:2661605..2666186

Molecular Weight (calculated)

41332.3 Da

IEP (calculated)

8.826

GRAVY (calculated)

-0.145

Length

386 amino acids

Sequence
(BLAST)

001: MERMLARLMR RRSSSPLSDL LHHGGAAAAG SLQAAAGATA ASPWLFSHHQ QQQQQHTAAA ALPGLKIRDS ASQLIGRTPM VYLNKVTEGC GARIAAKLEF
101: LQPSFSVKDR PAISMLEDAE KRGLITPGKT TLIEPTSGNM GIGLAFMAAL KGYELILTMP SYTSLERRVT MRAFGANLVL TDPTKGMGGT VRKAAELYEK
201: HPSAYMLQQF QNPANVKVHY ETTGPEIWED TLGQVDIFVM GIGSGGTVTG VGKYLKEKNP NAKIYGVEPA EANVLNGGKP GPHLITGNGV GFKPDILDMD
301: VMEKVLEVKG EDAVKMAREL ALKEGLLVGI SSGANTVAAL ELAKKPENKG KLIVTVLPSL GERYLSSALF DELRKEAEAM EPVPVD

Best Arabidopsis Sequence Match ( AT3G61440.1 )
(BLAST)

001: MASVSRRLLR RETIPCFSHT VRKLFSTVGS PSFAQRLRDL PKDFPSTNAK RDASLLIGKT PLVFLNKVTE GCEAYVAAKQ EHFQPTCSIK DRPAIAMIAD
101: AEKKKLIIPG KTTLIEPTSG NMGISLAFMA AMKGYRIIMT MPSYTSLERR VTMRSFGAEL VLTDPAKGMG GTVKKAYDLL DSTPDAFMCQ QFANPANTQI
201: HFDTTGPEIW EDTLGNVDIF VMGIGSGGTV SGVGRYLKSK NPNVKIYGVE PAESNILNGG KPGPHAITGN GVGFKPEILD MDVMESVLEV SSEDAIKMAR
301: ELALKEGLMV GISSGANTVA AIRLAKMPEN KGKLIVTIHA SFGERYLSSV LFDELRKEAE EMKPVSVD

Arabidopsis Description

CYSC1Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9S757]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.