Factsheet for PGSC0003DMT400064098

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021594	Potato	cytosol	48.72	37.62
PGSC0003DMT400034224	Potato	cytosol	30.77	32.88
Solyc04g058120.1.1	Tomato	mitochondrion	35.9	30.77
PGSC0003DMT400080490	Potato	cytosol, mitochondrion, nucleus, plastid	39.74	23.48
PGSC0003DMT400040030	Potato	cytosol	29.49	21.5
PGSC0003DMT400012263	Potato	cytosol	28.21	20.56
PGSC0003DMT400000156	Potato	mitochondrion	79.49	17.87
VIT_04s0044g00250.t01	Wine grape	mitochondrion	76.92	16.71
VIT_15s0046g02300.t01	Wine grape	mitochondrion	76.92	16.17
CDY48919	Canola	endoplasmic reticulum	64.1	15.87
KRH40428	Soybean	mitochondrion	73.08	15.28
PGSC0003DMT400016646	Potato	mitochondrion	67.95	15.1
KRH00797	Soybean	mitochondrion	71.79	15.05
GSMUA_Achr5P19480_001	Banana	mitochondrion	65.38	14.21
Bra007604.1-P	Field mustard	mitochondrion	64.1	13.59
CDX71737	Canola	mitochondrion	64.1	13.59
AT3G61440.1	Thale cress	mitochondrion	62.82	13.32
Os04t0165700-01	Rice	mitochondrion	64.1	13.26
Bra014436.1-P	Field mustard	mitochondrion	61.54	13.04
CDY43932	Canola	mitochondrion	61.54	13.04
CDX89116	Canola	mitochondrion	61.54	13.04
TraesCS5B01G300800.1	Wheat	mitochondrion	62.82	12.96
TraesCS5A01G300400.1	Wheat	mitochondrion	62.82	12.89
Zm00001d004413_P002	Maize	mitochondrion	62.82	12.83
EES11801	Sorghum	mitochondrion	62.82	12.69
PGSC0003DMT400082113	Potato	cytosol	47.44	11.38
HORVU2Hr1G000280.3	Barley	golgi, peroxisome, plastid	62.82	10.75
PGSC0003DMT400059624	Potato	cytosol, plastid	48.72	9.84
KRH74905	Soybean	cytosol	7.69	7.5
PGSC0003DMT400057393	Potato	plastid	24.36	4.52
CDY68838	Canola	mitochondrion	2.56	1.47
HORVU7Hr1G023500.1	Barley	cytosol	0.0	0.0

Protein Annotations

KEGG:00460+4.4.1.9	Gene3D:3.40.50.1100	MapMan:35.1	InterPro:CAS	GO:GO:0003674	GO:GO:0003824
GO:GO:0004124	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344
GO:GO:0019499	GO:GO:0050017	UniProt:M1CBR0	EnsemblPlantsGene:PGSC0003DMG400024907	PGSC:PGSC0003DMG400024907	EnsemblPlants:PGSC0003DMT400064098
PANTHER:PTHR10314	PANTHER:PTHR10314:SF80	SUPFAM:SSF53686	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0002955DF2	:

Description

Cysteine synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400024907]

Coordinates

chr1:-:79945938..79947563

Molecular Weight (calculated)

8895.2 Da

IEP (calculated)

9.880

GRAVY (calculated)

0.132

Length

78 amino acids

Sequence
(BLAST)

1: MGINIAFMAA MKGYEMVLKL PSYTSMERRG KMIAFRADLI LIDPTQGIIG TVKKAYELLE STPNAFMLQQ FYNLQTLR

Best Arabidopsis Sequence Match ( AT3G61440.3 )
(BLAST)

001: MGISLAFMAA MKGYRIIMTM PSYTSLERRV TMRSFGAELV LTDPAKGMGG TVKKAYDLLD STPDAFMCQQ FANPANTQIH FDTTGPEIWE DTLGNVDIFV
101: MGIGSGGTVS GVGRYLKSKN PNVKIYGVEP AESNILNGGK PGPHAITGNG VGFKPEILDM DVMESVLEVS SEDAIKMARE LALKEGLMVG ISSGANTVAA
201: IRLAKMPENK GKLIVTIHAS FGERYLSSVL FDELRKEAEE MKPVSVD

Arabidopsis Description

CYSC1Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9S757]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.