Factsheet for PGSC0003DMT400016646

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g012370.2.1	Tomato	mitochondrion	97.72	97.72
PGSC0003DMT400000156	Potato	mitochondrion	84.05	85.01
VIT_15s0046g02300.t01	Wine grape	mitochondrion	86.89	82.21
KRH00797	Soybean	mitochondrion	85.19	80.38
KRH40428	Soybean	mitochondrion	85.19	80.16
VIT_04s0044g00250.t01	Wine grape	mitochondrion	80.91	79.11
KRH74905	Soybean	cytosol	17.95	78.75
PGSC0003DMT400034224	Potato	cytosol	16.24	78.08
AT3G61440.1	Thale cress	mitochondrion	80.63	76.9
Bra007604.1-P	Field mustard	mitochondrion	79.77	76.09
Bra014436.1-P	Field mustard	mitochondrion	79.49	75.82
CDX71737	Canola	mitochondrion	79.49	75.82
CDX89116	Canola	mitochondrion	79.49	75.82
CDY43932	Canola	mitochondrion	79.2	75.54
PGSC0003DMT400021594	Potato	cytosol	21.08	73.27
CDY48919	Canola	endoplasmic reticulum	65.24	72.7
GSMUA_Achr5P19480_001	Banana	mitochondrion	72.36	70.75
PGSC0003DMT400012263	Potato	cytosol	21.37	70.09
PGSC0003DMT400040030	Potato	cytosol	21.37	70.09
PGSC0003DMT400064098	Potato	cytosol	15.1	67.95
Os04t0165700-01	Rice	mitochondrion	72.36	67.37
EES11801	Sorghum	mitochondrion	72.65	66.06
HORVU7Hr1G023500.1	Barley	cytosol	19.94	66.04
TraesCS5B01G300800.1	Wheat	mitochondrion	70.94	65.87
Zm00001d004413_P002	Maize	mitochondrion	71.51	65.71
TraesCS5A01G300400.1	Wheat	mitochondrion	70.37	65.0
PGSC0003DMT400082113	Potato	cytosol	56.98	61.54
HORVU2Hr1G000280.3	Barley	golgi, peroxisome, plastid	70.66	54.39
PGSC0003DMT400059624	Potato	cytosol, plastid	57.55	52.33
PGSC0003DMT400080490	Potato	cytosol, mitochondrion, nucleus, plastid	17.66	46.97
CDY68838	Canola	mitochondrion	15.1	38.97
PGSC0003DMT400057393	Potato	plastid	30.77	25.71

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00460+4.4.1.9	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:50.2.5	EMBL:AB027000
ProteinID:BAB18760	ProteinID:BAB18760.1	InterPro:CAS	InterPro:CysK	InterPro:Cys_synth	GO:GO:0003674
GO:GO:0003824	GO:GO:0004124	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006534	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016829	GO:GO:0019344	GO:GO:0019499
GO:GO:0050017	UniProt:M1A7Z6	InterPro:P-phosphate_BS	PFAM:PF00291	EnsemblPlantsGene:PGSC0003DMG400006506	PGSC:PGSC0003DMG400006506
EnsemblPlants:PGSC0003DMT400016646	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF80	SUPFAM:SSF53686
TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI00029567BF	SEG:seg	:

Description

Cysteine synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400006506]

Coordinates

chr10:-:20039872..20048642

Molecular Weight (calculated)

38228.3 Da

IEP (calculated)

8.776

GRAVY (calculated)

-0.234

Length

351 amino acids

Sequence
(BLAST)

001: MASLLRRRFY SSESSFAQRL RDLPKYLPGT NIKTQVSQLI GKTPLVYLNK VSEGCGAYIA VKQEMMQPTS SIKDRPAFAM INDAEKKGLI TPGKTTLIEP
101: TSGNMGISMA FMAAMKGYKM ILTMPSYTSL ERRVTMRAFG ADLVITDPTK GMGGTIKKAY NLLESTPNAY MLQQFSNPAN TQAHFETTGP EIWEDTQGNV
201: DIFVMGIGSG GTVSGVGQYL KSKNPNVKIY GIEPTESNVL NGGKPGPHEI TGNGVGFKPD ILDMDVMEEV LMVSSEESVN MARELALKEG LMVGISSGAN
301: TVAALRLANR PENKGKLIVT IHPSFGERYL SSVLYEDIRK EAQNMQPVSV D

Best Arabidopsis Sequence Match ( AT3G61440.1 )
(BLAST)

001: MASVSRRLLR RETIPCFSHT VRKLFSTVGS PSFAQRLRDL PKDFPSTNAK RDASLLIGKT PLVFLNKVTE GCEAYVAAKQ EHFQPTCSIK DRPAIAMIAD
101: AEKKKLIIPG KTTLIEPTSG NMGISLAFMA AMKGYRIIMT MPSYTSLERR VTMRSFGAEL VLTDPAKGMG GTVKKAYDLL DSTPDAFMCQ QFANPANTQI
201: HFDTTGPEIW EDTLGNVDIF VMGIGSGGTV SGVGRYLKSK NPNVKIYGVE PAESNILNGG KPGPHAITGN GVGFKPEILD MDVMESVLEV SSEDAIKMAR
301: ELALKEGLMV GISSGANTVA AIRLAKMPEN KGKLIVTIHA SFGERYLSSV LFDELRKEAE EMKPVSVD

Arabidopsis Description

CYSC1Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9S757]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.