Factsheet for TraesCS5B01G300800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

mitochondrion: 21043471

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G300400.1	Wheat	mitochondrion	97.62	97.11
Os04t0165700-01	Rice	mitochondrion	83.07	83.29
EES11801	Sorghum	mitochondrion	83.86	82.12
Zm00001d004413_P002	Maize	mitochondrion	82.54	81.68
HORVU7Hr1G023500.1	Barley	cytosol	22.49	80.19
GSMUA_Achr5P19480_001	Banana	mitochondrion	74.6	78.55
HORVU2Hr1G000280.3	Barley	golgi, peroxisome, plastid	93.39	77.41
KRH74905	Soybean	cytosol	15.61	73.75
PGSC0003DMT400000156	Potato	mitochondrion	66.93	72.91
Solyc10g012370.2.1	Tomato	mitochondrion	66.67	71.79
KRH00797	Soybean	mitochondrion	70.11	71.24
KRH40428	Soybean	mitochondrion	70.11	71.05
PGSC0003DMT400016646	Potato	mitochondrion	65.87	70.94
Solyc01g094790.2.1	Tomato	plastid	66.67	70.59
Bra007604.1-P	Field mustard	mitochondrion	68.25	70.11
VIT_15s0046g02300.t01	Wine grape	mitochondrion	68.78	70.08
CDY43932	Canola	mitochondrion	67.99	69.84
AT3G61440.1	Thale cress	mitochondrion	67.99	69.84
CDX71737	Canola	mitochondrion	67.99	69.84
CDX89116	Canola	mitochondrion	67.72	69.57
Bra014436.1-P	Field mustard	mitochondrion	67.72	69.57
PGSC0003DMT400034224	Potato	cytosol	13.23	68.49
CDY48919	Canola	endoplasmic reticulum	56.35	67.62
VIT_04s0044g00250.t01	Wine grape	mitochondrion	63.49	66.85
PGSC0003DMT400021594	Potato	cytosol	17.72	66.34
PGSC0003DMT400064098	Potato	cytosol	12.96	62.82
TraesCS2B01G316800.1	Wheat	cytosol	53.44	61.77
PGSC0003DMT400040030	Potato	cytosol	17.2	60.75
PGSC0003DMT400012263	Potato	cytosol	16.93	59.81
Solyc04g058120.1.1	Tomato	mitochondrion	14.02	58.24
TraesCS3B01G102500.1	Wheat	golgi, plastid	55.56	53.57
TraesCS6B01G217200.2	Wheat	cytosol	42.33	46.92
TraesCS5B01G018700.3	Wheat	plastid	53.97	46.47
TraesCS3B01G370200.3	Wheat	plastid	46.3	46.42
PGSC0003DMT400080490	Potato	cytosol, mitochondrion, nucleus, plastid	14.29	40.91
CDY68838	Canola	mitochondrion	13.76	38.24
TraesCS4B01G245100.1	Wheat	plastid	28.31	24.26

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00460+4.4.1.9	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:50.2.5	InterPro:CAS
InterPro:CysK	InterPro:Cys_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006535	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019499	GO:GO:0050017
InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF80
SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	EnsemblPlantsGene:TraesCS5B01G300800	EnsemblPlants:TraesCS5B01G300800.1	InterPro:Trypto_synt_PLP_dependent
TIGR:cd01561	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:485903038..485906379

Molecular Weight (calculated)

40190.6 Da

IEP (calculated)

6.809

GRAVY (calculated)

-0.106

Length

378 amino acids

Sequence
(BLAST)

001: MERVVMRLVR NKQSLRQLQG AAAGGLASSS SASSTAGAAA SSFSTLQQQQ EDHPGVLNIR DTAAHLIGRT PLVYLNKVTE GCGARVAAKL EFLQPSFSVK
101: DRPAISMIED AEKKGLITPG KTTLIEPTSG NMGIGLAFMA ALKGYELVLT MPSYTSLERR VVMKAFGAQL VLTDPAKGMG GTVRKATQLY ENHPSAFMLQ
201: QFENPANVQV HYETTGPEIW EDTLGQVDIF VMGIGSGGTV TGVGKYLKEK NPNAKIYGVE PAEANVLNGG KPGPHLITGN GVGFKPDILD MDIMEKVLEV
301: KSEDAVTMAQ QLALQEGLLV GISSGANTVA AIELAKRPEN KGKLIVTVHP SAGERYLSSA LFEGLRKEAE AMQPVPVD

Best Arabidopsis Sequence Match ( AT3G61440.1 )
(BLAST)

001: MASVSRRLLR RETIPCFSHT VRKLFSTVGS PSFAQRLRDL PKDFPSTNAK RDASLLIGKT PLVFLNKVTE GCEAYVAAKQ EHFQPTCSIK DRPAIAMIAD
101: AEKKKLIIPG KTTLIEPTSG NMGISLAFMA AMKGYRIIMT MPSYTSLERR VTMRSFGAEL VLTDPAKGMG GTVKKAYDLL DSTPDAFMCQ QFANPANTQI
201: HFDTTGPEIW EDTLGNVDIF VMGIGSGGTV SGVGRYLKSK NPNVKIYGVE PAESNILNGG KPGPHAITGN GVGFKPEILD MDVMESVLEV SSEDAIKMAR
301: ELALKEGLMV GISSGANTVA AIRLAKMPEN KGKLIVTIHA SFGERYLSSV LFDELRKEAE EMKPVSVD

Arabidopsis Description

CYSC1Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9S757]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.