Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G277500.1 | |
| TraesCS1B01G286500.1 | |
| TraesCS1D01G276700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G55880.1 | TraesCS1A01G277500.1 | AT3G44590.1 | 21798944 |
| AT1G55880.1 | TraesCS1B01G286500.1 | AT3G44590.1 | 21798944 |
| AT1G55880.1 | TraesCS1D01G276700.1 | AT3G44590.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G244300.1 | Wheat | plastid | 99.09 | 99.09 |
| TraesCS4A01G079100.1 | Wheat | plastid | 97.28 | 97.72 |
| HORVU4Hr1G067610.1 | Barley | plastid | 96.83 | 90.66 |
| Os03t0215800-01 | Rice | plastid | 84.35 | 82.67 |
| EER95270 | Sorghum | plastid | 83.22 | 80.84 |
| GSMUA_Achr3P26040_001 | Banana | endoplasmic reticulum | 73.7 | 75.23 |
| Zm00001d028220_P001 | Maize | plastid | 82.54 | 74.29 |
| PGSC0003DMT400057393 | Potato | plastid | 70.07 | 73.57 |
| Solyc07g065470.2.1 | Tomato | peroxisome, plasma membrane | 69.84 | 73.16 |
| VIT_19s0015g00380.t01 | Wine grape | plastid | 69.16 | 72.45 |
| AT1G55880.1 | Thale cress | endoplasmic reticulum | 68.25 | 71.5 |
| Bra038025.1-P | Field mustard | plastid | 69.16 | 70.6 |
| KRH14231 | Soybean | mitochondrion | 68.03 | 70.59 |
| CDY52906 | Canola | plastid | 68.93 | 70.37 |
| CDY53756 | Canola | endoplasmic reticulum | 68.93 | 69.41 |
| KRH73904 | Soybean | cytosol | 56.92 | 59.48 |
| TraesCS2B01G316800.1 | Wheat | cytosol | 26.08 | 35.17 |
| TraesCS6B01G217200.2 | Wheat | cytosol | 23.58 | 30.5 |
| TraesCS3B01G370200.3 | Wheat | plastid | 24.72 | 28.91 |
| TraesCS5B01G300800.1 | Wheat | mitochondrion | 24.26 | 28.31 |
| TraesCS3B01G102500.1 | Wheat | golgi, plastid | 23.81 | 26.79 |
| TraesCS5B01G018700.3 | Wheat | plastid | 24.49 | 24.6 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G245100.1 | EnsemblPlantsGene:TraesCS4B01G245100 | GO:GO:0006535 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:P-phosphate_BS | InterPro:PLP-dep | InterPro:Trypto_synt_PLP_dependent | PANTHER:PTHR10314 | PANTHER:PTHR10314:SF35 |
| PFAM:PF00291 | ScanProsite:PS00901 | SEG:seg | SUPFAM:SSF53686 | TIGR:cd01561 | TMHMM:TMhelix |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:506923858..506927821
Molecular Weight (calculated)
47268.0 Da
IEP (calculated)
8.210
GRAVY (calculated)
-0.184
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAATATAAG AAAAAASISL FAYYFLFGRS GSKFLWARTT SADDRRTRRK GLVEAVGNTP LIRINSLSDA TGCEILGKAE FLNPGGSVKD RVAVKIIEEA
101: LKSGDLVCGG VVTEGSAGST AISLATVAPA YGCRCHVVIP DDAAVEKSQI IEALGATVER VRPVSITHRD HFVNIARRRA LEANIASAQR EPNHIQTNGS
201: AYVDTKTLNS KQTNGSAHAS SEVPDTGKCY PNSDSKGGFF ADQFENMANY RAHYEWTGPE IWKQTKGTVH AFVAAAGTGG TIAGVSRYLK EMNRNVQCFL
301: MDPPGSGLFN KVTRGVMYTK EEAEGKRLKN PFDTITEGIG INRVTANFMM AELDGAYRGT DREAVEMSRF LLRRDGLFVG SSSAMNCVGA VRVARDLGPG
401: HTIVTILCDS GMRHLSKFFN DEYLANHGLT PTATGLEFLD Q
101: LKSGDLVCGG VVTEGSAGST AISLATVAPA YGCRCHVVIP DDAAVEKSQI IEALGATVER VRPVSITHRD HFVNIARRRA LEANIASAQR EPNHIQTNGS
201: AYVDTKTLNS KQTNGSAHAS SEVPDTGKCY PNSDSKGGFF ADQFENMANY RAHYEWTGPE IWKQTKGTVH AFVAAAGTGG TIAGVSRYLK EMNRNVQCFL
301: MDPPGSGLFN KVTRGVMYTK EEAEGKRLKN PFDTITEGIG INRVTANFMM AELDGAYRGT DREAVEMSRF LLRRDGLFVG SSSAMNCVGA VRVARDLGPG
401: HTIVTILCDS GMRHLSKFFN DEYLANHGLT PTATGLEFLD Q
001: MAPVNMTGAV VAAAALLMLT SYSFFFRLSE KKKRKEKLTM RNGLVDAIGN TPLIRINSLS EATGCEILGK CEFLNPGGSV KDRVAVKIIQ EALESGKLFP
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K
Arabidopsis Description
At1g55880 [Source:UniProtKB/TrEMBL;Acc:Q6NKY5]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.