Factsheet for TraesCS1B01G286500.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G194400.1
TraesCS7B01G100000.1
TraesCS7D01G196000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44590.1	TraesCS7A01G194400.1	AT1G10510.1	21798944
AT3G44590.1	TraesCS7B01G100000.1	AT1G10510.1	21798944
AT3G44590.1	TraesCS7D01G196000.1	AT1G10510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G276700.1	Wheat	extracellular	99.11	99.11
TraesCS1A01G277500.1	Wheat	nucleus	98.21	97.35
HORVU1Hr1G073640.1	Barley	cytosol	90.18	89.38
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	73.21	72.57
KRH26594	Soybean	endoplasmic reticulum	64.29	64.86
Os05t0445500-01	Rice	nucleus	78.57	63.31
KXG22113	Sorghum	endoplasmic reticulum, extracellular, plastid	79.46	61.38
AT3G44590.1	Thale cress	extracellular	57.14	57.66
AT2G27710.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.14	55.65
CDX83277	Canola	extracellular	56.25	55.26
Bra000501.1-P	Field mustard	extracellular	56.25	55.26
CDY04508	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.36	54.87
CDY31188	Canola	extracellular	55.36	54.39
Bra012004.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.46	53.98
CDY30535	Canola	extracellular	53.57	53.1
CDX77131	Canola	extracellular	53.57	53.1
Bra034363.1-P	Field mustard	extracellular	53.57	53.1
CDX71430	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.57	52.63
TraesCS7B01G290200.1	Wheat	cytosol	50.0	50.0
Zm00001d010128_P003	Maize	cytosol	73.21	49.7
KRH22710	Soybean	endoplasmic reticulum	64.29	48.32
AT2G27720.2	Thale cress	extracellular	55.36	47.69

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038716
HAMAP:MF_01478	InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF76	InterPro:Ribosomal_L12
EnsemblPlantsGene:TraesCS1B01G286500	EnsemblPlants:TraesCS1B01G286500.1	TIGR:cd05833	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:+:498631341..498632365

Molecular Weight (calculated)

11377.2 Da

IEP (calculated)

3.980

GRAVY (calculated)

-0.052

Length

112 amino acids

Sequence
(BLAST)

001: MKLIAAYLLA YLGGNSSPSA ADVKNILDSV GAEADEEKLE FLLAELKGKD ITEVIASGRE KFAAVPSGGG AIAVGAPAAA SGGAAAPAAE SKEEKVEEKE
101: ESDEDMGFSL FD

Best Arabidopsis Sequence Match ( AT3G44590.2 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.