Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04508 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 93.86 | 94.69 |
| CDY30535 | Canola | extracellular | 87.72 | 88.5 |
| CDX77131 | Canola | extracellular | 86.84 | 87.61 |
| AT2G27710.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 87.72 | 86.96 |
| CDX83277 | Canola | extracellular | 86.84 | 86.84 |
| CDY31188 | Canola | extracellular | 86.84 | 86.84 |
| AT2G27720.2 | Thale cress | extracellular | 85.09 | 74.62 |
| KRH26594 | Soybean | endoplasmic reticulum | 62.28 | 63.96 |
| HORVU1Hr1G073640.1 | Barley | cytosol | 54.39 | 54.87 |
| TraesCS1A01G277500.1 | Wheat | nucleus | 54.39 | 54.87 |
| TraesCS1D01G276700.1 | Wheat | extracellular | 53.51 | 54.46 |
| TraesCS1B01G286500.1 | Wheat | extracellular | 52.63 | 53.57 |
| CDY04023 | Canola | cytosol | 49.12 | 49.56 |
| CDY00130 | Canola | cytosol | 49.12 | 49.56 |
| KRH22710 | Soybean | endoplasmic reticulum | 64.04 | 48.99 |
| CDX86428 | Canola | cytosol | 47.37 | 47.79 |
| Os05t0445500-01 | Rice | nucleus | 57.89 | 47.48 |
| CDY47246 | Canola | extracellular | 47.37 | 47.37 |
| CDX85202 | Canola | extracellular | 46.49 | 46.9 |
| KXG22113 | Sorghum | endoplasmic reticulum, extracellular, plastid | 53.51 | 42.07 |
| Zm00001d010128_P003 | Maize | cytosol | 50.88 | 35.15 |
Protein Annotations
| Gene3D:1.10.10.1410 | MapMan:17.1.2.1.47 | GO:A0A078C3K5 | EnsemblPlants:CDX71430 | ProteinID:CDX71430 | ProteinID:CDX71430.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00148274001 | InterPro:IPR038716 | HAMAP:MF_01478 |
| InterPro:P1/P2_N_sf | PFAM:PF00428 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF72 | InterPro:Ribosomal_L12 | UniParc:UPI0004EDEDFA |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g16650D
Coordinates
chrLK031793:-:808932..810032
Molecular Weight (calculated)
11463.5 Da
IEP (calculated)
4.226
GRAVY (calculated)
-0.200
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVVAAYLLA ALSGKASPTS ADIKQILGSV GCESEDSQIE LLLKEVSGKD LCDLIATGRE KLASVPSGGG GVAMASAPSA GGGGGGSPAA EAKKEEKKEE
101: KEESDDDMGF SLFE
101: KEESDDDMGF SLFE
1: MKVVAAYLLA VLSGKASPTS ADIKTILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG ASAAESKKEE KKEEKEESDD DMGFSLFE
Arabidopsis Description
RPP2BAT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.