Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86428 | Canola | cytosol | 92.92 | 92.92 |
| CDX85202 | Canola | extracellular | 89.38 | 89.38 |
| CDY00130 | Canola | cytosol | 84.96 | 84.96 |
| CDY47246 | Canola | extracellular | 79.65 | 78.95 |
| AT3G28500.1 | Thale cress | cytosol | 69.03 | 67.83 |
| VIT_08s0007g03620.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 58.41 | 57.89 |
| Solyc11g067100.1.1 | Tomato | nucleus | 57.52 | 57.52 |
| PGSC0003DMT400030564 | Potato | extracellular | 54.87 | 55.86 |
| KRH30835 | Soybean | endoplasmic reticulum | 55.75 | 55.26 |
| KRH32679 | Soybean | endoplasmic reticulum | 54.87 | 54.39 |
| PGSC0003DMT400019150 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.75 | 54.31 |
| VIT_13s0074g00750.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 54.87 | 53.91 |
| CDY31188 | Canola | extracellular | 53.98 | 53.51 |
| CDX83277 | Canola | extracellular | 53.98 | 53.51 |
| CDY30535 | Canola | extracellular | 53.1 | 53.1 |
| CDX77131 | Canola | extracellular | 53.1 | 53.1 |
| TraesCS2D01G291600.1 | Wheat | unclear | 51.33 | 51.33 |
| TraesCS2B01G310300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.33 | 51.33 |
| CDY04508 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.33 | 51.33 |
| TraesCS2A01G294000.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.33 | 51.33 |
| PGSC0003DMT400029096 | Potato | cytosol | 50.44 | 50.89 |
| EES13065 | Sorghum | extracellular | 49.56 | 50.0 |
| EES12108 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 49.56 | 50.0 |
| Zm00001d001899_P001 | Maize | plasma membrane | 49.56 | 49.56 |
| Zm00001d026578_P002 | Maize | plastid | 48.67 | 49.55 |
| Os01t0191100-01 | Rice | extracellular | 49.56 | 49.12 |
| CDX71430 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 49.56 | 49.12 |
| OQU78483 | Sorghum | endoplasmic reticulum, extracellular | 50.44 | 47.5 |
| GSMUA_Achr10P... | Banana | plasma membrane | 48.67 | 47.41 |
| GSMUA_Achr6P07520_001 | Banana | cytosol | 38.94 | 46.81 |
| VIT_10s0042g01190.t01 | Wine grape | extracellular | 46.02 | 46.02 |
| Zm00001d009653_P008 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 48.67 | 45.83 |
| VIT_06s0061g01600.t01 | Wine grape | cytosol | 56.64 | 44.14 |
| Solyc07g007880.1.1 | Tomato | cytosol | 42.48 | 42.86 |
| VIT_18s0076g00370.t01 | Wine grape | cytosol | 36.28 | 41.41 |
| Solyc06g074430.2.1 | Tomato | nucleus, unclear | 54.87 | 40.0 |
| PGSC0003DMT400085198 | Potato | cytosol, plastid | 41.59 | 39.83 |
| HORVU0Hr1G004480.1 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 28.32 | 28.07 |
| Zm00001d009652_P003 | Maize | mitochondrion | 48.67 | 21.74 |
| Zm00001d009657_P001 | Maize | cytosol, mitochondrion | 51.33 | 20.64 |
Protein Annotations
| Gene3D:1.10.10.1410 | MapMan:17.1.2.1.47 | GO:A0A078EWY3 | EnsemblPlants:CDY04023 | ProteinID:CDY04023 | ProteinID:CDY04023.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00117590001 | InterPro:IPR038716 | HAMAP:MF_01478 |
| InterPro:P1/P2_N_sf | PFAM:PF00428 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF75 | InterPro:Ribosomal_L12 | UniParc:UPI0004EF1CFD |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g37380D
Coordinates
chrLK031948:+:468066..468407
Molecular Weight (calculated)
11690.7 Da
IEP (calculated)
4.036
GRAVY (calculated)
-0.176
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVIAAFLLA KLAGNEKPTK NDLKNIFDSV GAEFDEAETD LLFSLVKDHD VAELIAAGRE KMGALSSGGA GVAMVAGAGG DAPSAAEPAA ETKKVEEEKE
101: ESDDGEGMMS LFD
101: ESDDGEGMMS LFD
001: MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
101: KDESSDDAGM MGLFD
101: KDESSDDAGM MGLFD
Arabidopsis Description
RPP2C60S acidic ribosomal protein P2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH85]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.