CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033049.1-P	Field mustard	cytosol	99.12	99.12
CDY04023	Canola	cytosol	78.95	79.65
CDX86428	Canola	cytosol	77.19	77.88
CDX85202	Canola	extracellular	74.56	75.22
CDY00130	Canola	cytosol	73.68	74.34
AT3G28500.1	Thale cress	cytosol	69.3	68.7
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.89	57.39
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.26	54.31
Solyc11g067100.1.1	Tomato	nucleus	53.51	53.98
CDY31188	Canola	extracellular	53.51	53.51
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.51	53.51
KRH32679	Soybean	endoplasmic reticulum	53.51	53.51
CDY30535	Canola	extracellular	52.63	53.1
CDX83277	Canola	extracellular	52.63	52.63
CDX77131	Canola	extracellular	51.75	52.21
KRH30835	Soybean	endoplasmic reticulum	51.75	51.75
PGSC0003DMT400029096	Potato	cytosol	50.0	50.89
PGSC0003DMT400030564	Potato	extracellular	49.12	50.45
VIT_10s0042g01190.t01	Wine grape	extracellular	50.0	50.44
Os01t0191100-01	Rice	extracellular	50.0	50.0
CDY04508	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.12	49.56
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.25	49.11
TraesCS2D01G291600.1	Wheat	unclear	48.25	48.67
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.25	48.67
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.25	48.67
Zm00001d026578_P002	Maize	plastid	46.49	47.75
CDX71430	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.37	47.37
EES13065	Sorghum	extracellular	46.49	47.32
GSMUA_Achr10P...	Banana	plasma membrane	47.37	46.55
Zm00001d001899_P001	Maize	plasma membrane	45.61	46.02
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.49	44.17
OQU78483	Sorghum	endoplasmic reticulum, extracellular	46.49	44.17
GSMUA_Achr6P07520_001	Banana	cytosol	35.09	42.55
VIT_06s0061g01600.t01	Wine grape	cytosol	53.51	42.07
PGSC0003DMT400085198	Potato	cytosol, plastid	42.98	41.53
VIT_18s0076g00370.t01	Wine grape	cytosol	35.09	40.4
Solyc07g007880.1.1	Tomato	cytosol	38.6	39.29
Solyc06g074430.2.1	Tomato	nucleus, unclear	52.63	38.71
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.82	29.82
Zm00001d009652_P003	Maize	mitochondrion	45.61	20.55
Zm00001d009657_P001	Maize	cytosol, mitochondrion	47.37	19.22

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	GO:A0A078IBN0	UniProt:A0A078IBN0	EnsemblPlants:CDY47246	ProteinID:CDY47246
ProteinID:CDY47246.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00086966001
InterPro:IPR038716	HAMAP:MF_01478	InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF75
InterPro:Ribosomal_L12	UniParc:UPI0004EE1779	SEG:seg	:	:	:

Description

BnaA02g29320DBnaA02g29320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBN0]

Coordinates

chrLK032704:+:100732..101076

Molecular Weight (calculated)

11768.8 Da

IEP (calculated)

4.099

GRAVY (calculated)

-0.165

Length

114 amino acids

Sequence
(BLAST)

001: MKVIAAFLLA KLAGNEKPTK DDLKSIFDSV GAEFDEAKTD LFFSLVKDHD VAELIAVGRE KMGALSSGGA GVAMVAGGGG GDAPSAAEPA AETKKVEEEK
101: EESDDGEGMM SLFD

Best Arabidopsis Sequence Match ( AT3G28500.1 )
(BLAST)

001: MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
101: KDESSDDAGM MGLFD

Arabidopsis Description

RPP2C60S acidic ribosomal protein P2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.