Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47246 | Canola | extracellular | 99.12 | 99.12 |
| Bra025339.1-P | Field mustard | cytosol | 76.32 | 76.99 |
| Bra039054.1-P | Field mustard | cytosol | 72.81 | 73.45 |
| AT3G28500.1 | Thale cress | cytosol | 68.42 | 67.83 |
| VIT_13s0074g00750.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 57.02 | 56.52 |
| PGSC0003DMT400019150 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 56.14 | 55.17 |
| Bra000501.1-P | Field mustard | extracellular | 53.51 | 53.51 |
| Solyc11g067100.1.1 | Tomato | nucleus | 52.63 | 53.1 |
| VIT_08s0007g03620.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 52.63 | 52.63 |
| KRH32679 | Soybean | endoplasmic reticulum | 52.63 | 52.63 |
| Bra034363.1-P | Field mustard | extracellular | 51.75 | 52.21 |
| KRH30835 | Soybean | endoplasmic reticulum | 50.88 | 50.88 |
| PGSC0003DMT400029096 | Potato | cytosol | 49.12 | 50.0 |
| VIT_10s0042g01190.t01 | Wine grape | extracellular | 49.12 | 49.56 |
| PGSC0003DMT400030564 | Potato | extracellular | 48.25 | 49.55 |
| Os01t0191100-01 | Rice | extracellular | 49.12 | 49.12 |
| EES12108 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 48.25 | 49.11 |
| Bra012004.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 48.25 | 48.67 |
| TraesCS2D01G291600.1 | Wheat | unclear | 47.37 | 47.79 |
| TraesCS2B01G310300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 47.37 | 47.79 |
| TraesCS2A01G294000.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 47.37 | 47.79 |
| Zm00001d026578_P002 | Maize | plastid | 46.49 | 47.75 |
| EES13065 | Sorghum | extracellular | 46.49 | 47.32 |
| GSMUA_Achr10P... | Banana | plasma membrane | 47.37 | 46.55 |
| Zm00001d001899_P001 | Maize | plasma membrane | 45.61 | 46.02 |
| Zm00001d009653_P008 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 46.49 | 44.17 |
| OQU78483 | Sorghum | endoplasmic reticulum, extracellular | 46.49 | 44.17 |
| GSMUA_Achr6P07520_001 | Banana | cytosol | 35.09 | 42.55 |
| PGSC0003DMT400085198 | Potato | cytosol, plastid | 42.98 | 41.53 |
| VIT_06s0061g01600.t01 | Wine grape | cytosol | 52.63 | 41.38 |
| VIT_18s0076g00370.t01 | Wine grape | cytosol | 34.21 | 39.39 |
| Solyc06g074430.2.1 | Tomato | nucleus, unclear | 53.51 | 39.35 |
| Solyc07g007880.1.1 | Tomato | cytosol | 38.6 | 39.29 |
| HORVU0Hr1G004480.1 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 29.82 | 29.82 |
| Zm00001d009652_P003 | Maize | mitochondrion | 45.61 | 20.55 |
| Zm00001d009657_P001 | Maize | cytosol, mitochondrion | 47.37 | 19.22 |
Protein Annotations
| Gene3D:1.10.10.1410 | MapMan:17.1.2.1.47 | EnsemblPlantsGene:Bra033049 | EnsemblPlants:Bra033049.1 | EnsemblPlants:Bra033049.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR038716 | UniProt:M4EW65 | HAMAP:MF_01478 |
| InterPro:P1/P2_N_sf | PFAM:PF00428 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF75 | InterPro:Ribosomal_L12 | UniParc:UPI0002547030 |
| SEG:seg | : | : | : | : | : |
Description
AT5G40040 (E=3e-021) | 60S acidic ribosomal protein P2 (RPP2E)
Coordinates
chrA02:-:21663867..21664211
Molecular Weight (calculated)
11752.8 Da
IEP (calculated)
4.099
GRAVY (calculated)
-0.142
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVIAAFLLA KLAGNEKPTK DDLKSIFDSV GAEFDEAKTD LFFSLVKDHD VAELIAVGRE KMGALSAGGA GVAMVAGGGG GDAPSAAEPA AETKKVEEEK
101: EESDDGEGMM SLFD
101: EESDDGEGMM SLFD
001: MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
101: KDESSDDAGM MGLFD
101: KDESSDDAGM MGLFD
Arabidopsis Description
RPP2C60S acidic ribosomal protein P2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH85]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.