Factsheet for PGSC0003DMT400019150

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
cytosol 3
plastid 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g067100.1.1	Tomato	nucleus	92.24	94.69
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.17	81.58
PGSC0003DMT400030564	Potato	extracellular	77.59	81.08
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	77.59	78.26
KRH32679	Soybean	endoplasmic reticulum	75.0	76.32
KRH30835	Soybean	endoplasmic reticulum	74.14	75.44
PGSC0003DMT400029096	Potato	cytosol	69.83	72.32
VIT_10s0042g01190.t01	Wine grape	extracellular	67.24	69.03
EES13065	Sorghum	extracellular	66.38	68.75
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.52	67.86
GSMUA_Achr10P...	Banana	plasma membrane	67.24	67.24
GSMUA_Achr6P07520_001	Banana	cytosol	54.31	67.02
Zm00001d001899_P001	Maize	plasma membrane	64.66	66.37
VIT_06s0061g01600.t01	Wine grape	cytosol	81.9	65.52
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.79	65.49
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.79	65.49
TraesCS2D01G291600.1	Wheat	unclear	63.79	65.49
Zm00001d026578_P002	Maize	plastid	62.07	64.86
OQU78483	Sorghum	endoplasmic reticulum, extracellular	66.38	64.17
Os01t0191100-01	Rice	extracellular	62.07	63.16
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.79	61.67
VIT_18s0076g00370.t01	Wine grape	cytosol	52.59	61.62
AT5G40040.1	Thale cress	cytosol	60.34	61.4
PGSC0003DMT400085198	Potato	cytosol, plastid	61.21	60.17
AT3G28500.1	Thale cress	cytosol	57.76	58.26
Bra033049.1-P	Field mustard	cytosol	55.17	56.14
CDY04023	Canola	cytosol	54.31	55.75
CDY00130	Canola	cytosol	54.31	55.75
CDY47246	Canola	extracellular	54.31	55.26
CDX86428	Canola	cytosol	53.45	54.87
CDX85202	Canola	extracellular	53.45	54.87
Bra025339.1-P	Field mustard	cytosol	53.45	54.87
Bra039054.1-P	Field mustard	cytosol	52.59	53.98
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.93	38.6
Zm00001d009652_P003	Maize	mitochondrion	63.79	29.25
Zm00001d009657_P001	Maize	cytosol, mitochondrion	66.38	27.4

Protein Annotations

Gene3D:1.10.10.1410	EntrezGene:102599598	MapMan:17.1.2.1.47	ProteinID:ABA40434	ProteinID:ABA40434.1	EMBL:DQ191633
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR038716	UniProt:M1ABN6
HAMAP:MF_01478	InterPro:P1/P2_N_sf	PFAM:PF00428	EnsemblPlantsGene:PGSC0003DMG400007410	PGSC:PGSC0003DMG400007410	EnsemblPlants:PGSC0003DMT400019150
PANTHER:PTHR21141	PANTHER:PTHR21141:SF72	InterPro:Ribosomal_L12	UniParc:UPI000294F37D	RefSeq:XP_006349107.1	SEG:seg

Description

60s acidic ribosomal protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007410]

Coordinates

chr11:-:39956264..39958957

Molecular Weight (calculated)

11544.7 Da

IEP (calculated)

4.299

GRAVY (calculated)

-0.023

Length

116 amino acids

Sequence
(BLAST)

001: MKVIASYLLA VLGGNTSPSA ADLKKILASV GAEADDDRIE LLLSQVKGKD ITELIAAGRE KLASVPAGGG GGVAVAVSGG GGGGGAAAPA AEEKKVEKKV
101: EEKEESDDDM GFSLFD

Best Arabidopsis Sequence Match ( AT3G28500.1 )
(BLAST)

001: MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
101: KDESSDDAGM MGLFD

Arabidopsis Description

RPP2C60S acidic ribosomal protein P2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.