Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G28500.1 | Thale cress | cytosol | 67.54 | 66.96 |
| Solyc11g067100.1.1 | Tomato | nucleus | 61.4 | 61.95 |
| PGSC0003DMT400030564 | Potato | extracellular | 58.77 | 60.36 |
| PGSC0003DMT400019150 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 61.4 | 60.34 |
| VIT_08s0007g03620.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 59.65 | 59.65 |
| KRH30835 | Soybean | endoplasmic reticulum | 59.65 | 59.65 |
| KRH32679 | Soybean | endoplasmic reticulum | 57.89 | 57.89 |
| AT2G27710.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 57.02 | 56.52 |
| TraesCS2D01G291600.1 | Wheat | unclear | 55.26 | 55.75 |
| TraesCS2B01G310300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.26 | 55.75 |
| TraesCS2A01G294000.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.26 | 55.75 |
| EES12108 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 53.51 | 54.46 |
| Zm00001d001899_P001 | Maize | plasma membrane | 53.51 | 53.98 |
| VIT_13s0074g00750.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 54.39 | 53.91 |
| EES13065 | Sorghum | extracellular | 52.63 | 53.57 |
| Zm00001d026578_P002 | Maize | plastid | 50.88 | 52.25 |
| AT3G44590.1 | Thale cress | extracellular | 50.88 | 52.25 |
| GSMUA_Achr6P07520_001 | Banana | cytosol | 42.11 | 51.06 |
| PGSC0003DMT400029096 | Potato | cytosol | 50.0 | 50.89 |
| GSMUA_Achr10P... | Banana | plasma membrane | 51.75 | 50.86 |
| Zm00001d009653_P008 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 52.63 | 50.0 |
| OQU78483 | Sorghum | endoplasmic reticulum, extracellular | 51.75 | 49.17 |
| AT2G27720.2 | Thale cress | extracellular | 55.26 | 48.46 |
| VIT_06s0061g01600.t01 | Wine grape | cytosol | 60.53 | 47.59 |
| Os01t0191100-01 | Rice | extracellular | 47.37 | 47.37 |
| Solyc07g007880.1.1 | Tomato | cytosol | 46.49 | 47.32 |
| VIT_10s0042g01190.t01 | Wine grape | extracellular | 46.49 | 46.9 |
| VIT_18s0076g00370.t01 | Wine grape | cytosol | 37.72 | 43.43 |
| Solyc06g074430.2.1 | Tomato | nucleus, unclear | 57.89 | 42.58 |
| PGSC0003DMT400085198 | Potato | cytosol, plastid | 43.86 | 42.37 |
| HORVU0Hr1G004480.1 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 32.46 | 32.46 |
| Zm00001d009652_P003 | Maize | mitochondrion | 51.75 | 23.32 |
| Zm00001d009657_P001 | Maize | cytosol, mitochondrion | 54.39 | 22.06 |
Protein Annotations
| Gene3D:1.10.10.1410 | MapMan:17.1.2.1.47 | EntrezGene:834001 | ProteinID:AED94504.1 | EMBL:AK175632 | EMBL:AK175633 |
| EMBL:AK175884 | EMBL:AK176151 | ArrayExpress:AT5G40040 | EnsemblPlantsGene:AT5G40040 | RefSeq:AT5G40040 | TAIR:AT5G40040 |
| RefSeq:AT5G40040-TAIR-G | EnsemblPlants:AT5G40040.1 | TAIR:AT5G40040.1 | ProteinID:BAA97352.1 | EMBL:BT010520 | GO:GO:0002181 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0022626 |
| GO:GO:0030529 | InterPro:IPR038716 | HAMAP:MF_01478 | RefSeq:NP_198820.1 | InterPro:P1/P2_N_sf | PFAM:PF00428 |
| PO:PO:0000037 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PANTHER:PTHR21141 |
| PANTHER:PTHR21141:SF75 | UniProt:Q9LUK2 | InterPro:Ribosomal_L12 | UniParc:UPI00000A0DC2 | SEG:seg | : |
Description
RPP2E60S acidic ribosomal protein P2-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUK2]
Coordinates
chr5:-:16029703..16030335
Molecular Weight (calculated)
11759.9 Da
IEP (calculated)
4.206
GRAVY (calculated)
-0.146
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVVAAYLLA KLSGNENPSV ADLKKIVESV GAEIDQEKID LFFSLIKDRD VTELIAVGRE KMAALSSGGG AVAVASGGGG GAAPAAEPAS VESKKKEEEK
101: EESEDDGGMM SLFD
101: EESEDDGGMM SLFD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.