Factsheet for PGSC0003DMT400085198

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 2
cytosol 3
plastid 4
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g007880.1.1	Tomato	cytosol	72.03	75.89
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.17	61.21
PGSC0003DMT400029096	Potato	cytosol	55.93	58.93
PGSC0003DMT400030564	Potato	extracellular	54.24	57.66
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.24	55.65
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.39	55.26
KRH32679	Soybean	endoplasmic reticulum	50.85	52.63
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.31	50.89
VIT_10s0042g01190.t01	Wine grape	extracellular	47.46	49.56
GSMUA_Achr10P...	Banana	plasma membrane	48.31	49.14
KRH30835	Soybean	endoplasmic reticulum	47.46	49.12
EES13065	Sorghum	extracellular	46.61	49.11
AT3G28500.1	Thale cress	cytosol	47.46	48.7
Zm00001d026578_P002	Maize	plastid	45.76	48.65
Zm00001d001899_P001	Maize	plasma membrane	45.76	47.79
Os01t0191100-01	Rice	extracellular	45.76	47.37
TraesCS2D01G291600.1	Wheat	unclear	44.92	46.9
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.92	46.9
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.92	46.9
OQU78483	Sorghum	endoplasmic reticulum, extracellular	45.76	45.0
GSMUA_Achr6P07520_001	Banana	cytosol	35.59	44.68
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.92	44.17
VIT_06s0061g01600.t01	Wine grape	cytosol	54.24	44.14
AT5G40040.1	Thale cress	cytosol	42.37	43.86
CDY00130	Canola	cytosol	41.53	43.36
Bra039054.1-P	Field mustard	cytosol	41.53	43.36
Bra033049.1-P	Field mustard	cytosol	41.53	42.98
CDY47246	Canola	extracellular	41.53	42.98
CDX86428	Canola	cytosol	39.83	41.59
CDY04023	Canola	cytosol	39.83	41.59
Bra025339.1-P	Field mustard	cytosol	39.83	41.59
CDX85202	Canola	extracellular	38.98	40.71
VIT_18s0076g00370.t01	Wine grape	cytosol	32.2	38.38
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.9	35.09
Zm00001d009652_P003	Maize	mitochondrion	44.92	20.95
Zm00001d009657_P001	Maize	cytosol, mitochondrion	44.92	18.86

Protein Annotations

Gene3D:1.10.10.1410	EntrezGene:102593057	MapMan:17.1.2.1.47	ncoils:Coil	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0006414	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR038716	UniProt:M1D8Y8	HAMAP:MF_01478	InterPro:P1/P2_N_sf
PFAM:PF00428	EnsemblPlantsGene:PGSC0003DMG400034769	PGSC:PGSC0003DMG400034769	EnsemblPlants:PGSC0003DMT400085198	PANTHER:PTHR21141	PANTHER:PTHR21141:SF75
InterPro:Ribosomal_L12	UniParc:UPI000295460F	RefSeq:XP_006358327.1	SEG:seg	:	:

Description

60s acidic ribosomal protein [Source:PGSC_GENE;Acc:PGSC0003DMG400034769]

Coordinates

chr7:-:4060197..4060553

Molecular Weight (calculated)

12825.0 Da

IEP (calculated)

4.169

GRAVY (calculated)

-0.430

Length

118 amino acids

Sequence
(BLAST)

001: MKVIAAYLLA QLGGNSNPSS NDLKKILNSV GAEIDDVKIE LLLSQVEGKD INELIAAGKQ RLASTTCMSF GCTNNNNNNN NASVGGQVVD VVEEKKEEKK
101: VEKVEESDEE DFNFSLFD

Best Arabidopsis Sequence Match ( AT3G28500.1 )
(BLAST)

001: MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
101: KDESSDDAGM MGLFD

Arabidopsis Description

RPP2C60S acidic ribosomal protein P2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.