Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86428 | Canola | cytosol | 100.0 | 100.0 |
| CDX85202 | Canola | extracellular | 96.46 | 96.46 |
| Bra039054.1-P | Field mustard | cytosol | 89.38 | 89.38 |
| Bra033049.1-P | Field mustard | cytosol | 76.99 | 76.32 |
| AT3G28500.1 | Thale cress | cytosol | 71.68 | 70.43 |
| PGSC0003DMT400030564 | Potato | extracellular | 55.75 | 56.76 |
| Solyc11g067100.1.1 | Tomato | nucleus | 56.64 | 56.64 |
| VIT_08s0007g03620.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 56.64 | 56.14 |
| KRH30835 | Soybean | endoplasmic reticulum | 55.75 | 55.26 |
| KRH32679 | Soybean | endoplasmic reticulum | 54.87 | 54.39 |
| VIT_13s0074g00750.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 54.87 | 53.91 |
| PGSC0003DMT400019150 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 54.87 | 53.45 |
| TraesCS2A01G294000.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 53.1 | 53.1 |
| TraesCS2B01G310300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 53.1 | 53.1 |
| TraesCS2D01G291600.1 | Wheat | unclear | 53.1 | 53.1 |
| PGSC0003DMT400029096 | Potato | cytosol | 51.33 | 51.79 |
| Bra000501.1-P | Field mustard | extracellular | 51.33 | 50.88 |
| Bra034363.1-P | Field mustard | extracellular | 50.44 | 50.44 |
| EES13065 | Sorghum | extracellular | 49.56 | 50.0 |
| EES12108 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 49.56 | 50.0 |
| Zm00001d001899_P001 | Maize | plasma membrane | 49.56 | 49.56 |
| Zm00001d026578_P002 | Maize | plastid | 48.67 | 49.55 |
| GSMUA_Achr10P... | Banana | plasma membrane | 50.44 | 49.14 |
| GSMUA_Achr6P07520_001 | Banana | cytosol | 40.71 | 48.94 |
| Bra012004.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 48.67 | 48.67 |
| Os01t0191100-01 | Rice | extracellular | 48.67 | 48.25 |
| VIT_10s0042g01190.t01 | Wine grape | extracellular | 46.9 | 46.9 |
| OQU78483 | Sorghum | endoplasmic reticulum, extracellular | 49.56 | 46.67 |
| Zm00001d009653_P008 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 48.67 | 45.83 |
| VIT_06s0061g01600.t01 | Wine grape | cytosol | 57.52 | 44.83 |
| Solyc07g007880.1.1 | Tomato | cytosol | 42.48 | 42.86 |
| VIT_18s0076g00370.t01 | Wine grape | cytosol | 36.28 | 41.41 |
| Solyc06g074430.2.1 | Tomato | nucleus, unclear | 55.75 | 40.65 |
| PGSC0003DMT400085198 | Potato | cytosol, plastid | 41.59 | 39.83 |
| HORVU0Hr1G004480.1 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 30.09 | 29.82 |
| Zm00001d009652_P003 | Maize | mitochondrion | 47.79 | 21.34 |
| Zm00001d009657_P001 | Maize | cytosol, mitochondrion | 50.44 | 20.28 |
Protein Annotations
| Gene3D:1.10.10.1410 | MapMan:17.1.2.1.47 | EnsemblPlantsGene:Bra025339 | EnsemblPlants:Bra025339.1 | EnsemblPlants:Bra025339.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR038716 | UniProt:M4E983 | HAMAP:MF_01478 |
| InterPro:P1/P2_N_sf | PFAM:PF00428 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF75 | InterPro:Ribosomal_L12 | UniParc:UPI000253FB66 |
| SEG:seg | : | : | : | : | : |
Description
AT3G28500 (E=3e-023) | 60S acidic ribosomal protein P2 (RPP2C)
Coordinates
chrA06:-:22098619..22098960
Molecular Weight (calculated)
11712.7 Da
IEP (calculated)
4.071
GRAVY (calculated)
-0.183
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVIAAFLLA KLAGNENPTK GDLKNIFDSV GAEFDETKTD LFFSLVKDHD VTELIAAGRE KMGALSSGGA AVAMVAGAGG DAPSAAEPAA ESKKVEEEKE
101: ESDDGEGMMS LFD
101: ESDDGEGMMS LFD
001: MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
101: KDESSDDAGM MGLFD
101: KDESSDDAGM MGLFD
Arabidopsis Description
RPP2C60S acidic ribosomal protein P2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH85]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.