Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g03620.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 70.34 | 89.47 |
| Solyc11g067100.1.1 | Tomato | nucleus | 67.59 | 86.73 |
| PGSC0003DMT400030564 | Potato | extracellular | 64.14 | 83.78 |
| PGSC0003DMT400019150 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 65.52 | 81.9 |
| KRH32679 | Soybean | endoplasmic reticulum | 64.14 | 81.58 |
| VIT_13s0074g00750.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 64.14 | 80.87 |
| KRH30835 | Soybean | endoplasmic reticulum | 62.76 | 79.82 |
| VIT_10s0042g01190.t01 | Wine grape | extracellular | 58.62 | 75.22 |
| PGSC0003DMT400029096 | Potato | cytosol | 54.48 | 70.54 |
| GSMUA_Achr10P... | Banana | plasma membrane | 55.86 | 69.83 |
| EES13065 | Sorghum | extracellular | 53.1 | 68.75 |
| TraesCS2D01G291600.1 | Wheat | unclear | 51.72 | 66.37 |
| TraesCS2B01G310300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.72 | 66.37 |
| TraesCS2A01G294000.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.72 | 66.37 |
| EES12108 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.03 | 66.07 |
| GSMUA_Achr6P07520_001 | Banana | cytosol | 42.76 | 65.96 |
| VIT_18s0076g00370.t01 | Wine grape | cytosol | 44.83 | 65.66 |
| Zm00001d001899_P001 | Maize | plasma membrane | 51.03 | 65.49 |
| Zm00001d026578_P002 | Maize | plastid | 49.66 | 64.86 |
| OQU78483 | Sorghum | endoplasmic reticulum, extracellular | 53.1 | 64.17 |
| Os01t0191100-01 | Rice | extracellular | 50.34 | 64.04 |
| Solyc06g074430.2.1 | Tomato | nucleus, unclear | 67.59 | 63.23 |
| Zm00001d009653_P008 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 50.34 | 60.83 |
| AT5G40040.1 | Thale cress | cytosol | 47.59 | 60.53 |
| AT3G28500.1 | Thale cress | cytosol | 47.59 | 60.0 |
| CDY00130 | Canola | cytosol | 44.83 | 57.52 |
| CDX86428 | Canola | cytosol | 44.83 | 57.52 |
| Bra025339.1-P | Field mustard | cytosol | 44.83 | 57.52 |
| CDY04023 | Canola | cytosol | 44.14 | 56.64 |
| CDX85202 | Canola | extracellular | 44.14 | 56.64 |
| Bra039054.1-P | Field mustard | cytosol | 44.14 | 56.64 |
| Solyc07g007880.1.1 | Tomato | cytosol | 42.76 | 55.36 |
| PGSC0003DMT400085198 | Potato | cytosol, plastid | 44.14 | 54.24 |
| CDY47246 | Canola | extracellular | 42.07 | 53.51 |
| Bra033049.1-P | Field mustard | cytosol | 41.38 | 52.63 |
| HORVU0Hr1G004480.1 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 29.66 | 37.72 |
| Zm00001d009652_P003 | Maize | mitochondrion | 51.03 | 29.25 |
| Zm00001d009657_P001 | Maize | cytosol, mitochondrion | 53.79 | 27.76 |
Protein Annotations
| Gene3D:1.10.10.1410 | EntrezGene:100241445 | wikigene:100241445 | MapMan:17.1.2.1.47 | EMBL:AM426377 | EMBL:AM457647 |
| ProteinID:CAN65595 | ProteinID:CAN65595.1 | ProteinID:CAN73396 | ProteinID:CAN73396.1 | ProteinID:CBI17057 | ProteinID:CBI17057.3 |
| UniProt:D7SN28 | EMBL:FN594957 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0022625 | GO:GO:0030529 | InterPro:IPR038716 | EntrezGene:LOC100241445 | wikigene:LOC100241445 |
| HAMAP:MF_01478 | InterPro:P1/P2_N_sf | PFAM:PF00428 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF72 | InterPro:Ribosomal_L12 |
| TIGR:TC60664 | UniParc:UPI0001BE0E09 | ArrayExpress:VIT_06s0061g01600 | EnsemblPlantsGene:VIT_06s0061g01600 | EnsemblPlants:VIT_06s0061g01600.t01 | unigene:Vvi.9325 |
| RefSeq:XP_002266030 | RefSeq:XP_002266030.1 | RefSeq:XP_002266030.2 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6:-:19536985..19538630
Molecular Weight (calculated)
14980.7 Da
IEP (calculated)
4.333
GRAVY (calculated)
-0.228
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEPPQVHFT AAPLLCKTLA TQEPEGRRSH HKMKVIAAYL LAVLGGNTCP SAEDLKDILG SVGAEADDDR IELLLAEVKG KDITELIASG REKLASVPSG
101: GGAAVAVAAP GGGGAAAPAA AEPKKEEKVE EKEESDDDMG FSLFD
101: GGAAVAVAAP GGGGAAAPAA AEPKKEEKVE EKEESDDDMG FSLFD
001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E
101: SDDDMGFSLF E
Arabidopsis Description
RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.