Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 nucleus: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH30835 | Soybean | endoplasmic reticulum | 92.11 | 92.11 |
| KRH67884 | Soybean | endoplasmic reticulum | 80.7 | 81.42 |
| KRG96175 | Soybean | extracellular | 79.82 | 80.53 |
| VIT_08s0007g03620.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 79.82 | 79.82 |
| Solyc11g067100.1.1 | Tomato | nucleus | 78.95 | 79.65 |
| PGSC0003DMT400019150 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 76.32 | 75.0 |
| VIT_13s0074g00750.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 75.44 | 74.78 |
| PGSC0003DMT400030564 | Potato | extracellular | 72.81 | 74.77 |
| KRH26594 | Soybean | endoplasmic reticulum | 70.18 | 72.07 |
| EES13065 | Sorghum | extracellular | 66.67 | 67.86 |
| EES12108 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 66.67 | 67.86 |
| VIT_10s0042g01190.t01 | Wine grape | extracellular | 66.67 | 67.26 |
| Zm00001d001899_P001 | Maize | plasma membrane | 66.67 | 67.26 |
| Zm00001d026578_P002 | Maize | plastid | 64.04 | 65.77 |
| TraesCS2A01G294000.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 64.04 | 64.6 |
| TraesCS2B01G310300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 64.04 | 64.6 |
| TraesCS2D01G291600.1 | Wheat | unclear | 64.04 | 64.6 |
| VIT_06s0061g01600.t01 | Wine grape | cytosol | 81.58 | 64.14 |
| PGSC0003DMT400029096 | Potato | cytosol | 62.28 | 63.39 |
| Zm00001d009653_P008 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 66.67 | 63.33 |
| OQU78483 | Sorghum | endoplasmic reticulum, extracellular | 66.67 | 63.33 |
| Os01t0191100-01 | Rice | extracellular | 63.16 | 63.16 |
| GSMUA_Achr10P... | Banana | plasma membrane | 64.04 | 62.93 |
| GSMUA_Achr6P07520_001 | Banana | cytosol | 50.0 | 60.64 |
| VIT_18s0076g00370.t01 | Wine grape | cytosol | 50.88 | 58.59 |
| AT5G40040.1 | Thale cress | cytosol | 57.89 | 57.89 |
| CDY00130 | Canola | cytosol | 56.14 | 56.64 |
| Solyc06g074430.2.1 | Tomato | nucleus, unclear | 76.32 | 56.13 |
| Bra039054.1-P | Field mustard | cytosol | 55.26 | 55.75 |
| AT3G28500.1 | Thale cress | cytosol | 56.14 | 55.65 |
| KRH22710 | Soybean | endoplasmic reticulum | 71.93 | 55.03 |
| CDY04023 | Canola | cytosol | 54.39 | 54.87 |
| CDX86428 | Canola | cytosol | 54.39 | 54.87 |
| Bra025339.1-P | Field mustard | cytosol | 54.39 | 54.87 |
| CDX85202 | Canola | extracellular | 53.51 | 53.98 |
| CDY47246 | Canola | extracellular | 53.51 | 53.51 |
| Bra033049.1-P | Field mustard | cytosol | 52.63 | 52.63 |
| Solyc07g007880.1.1 | Tomato | cytosol | 50.88 | 51.79 |
| PGSC0003DMT400085198 | Potato | cytosol, plastid | 52.63 | 50.85 |
| HORVU0Hr1G004480.1 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 33.33 | 33.33 |
| Zm00001d009652_P003 | Maize | mitochondrion | 65.79 | 29.64 |
| Zm00001d009657_P001 | Maize | cytosol, mitochondrion | 67.54 | 27.4 |
Protein Annotations
| Gene3D:1.10.10.1410 | EntrezGene:100500331 | MapMan:17.1.2.1.47 | EMBL:ACUP02006148 | EMBL:BT091250 | UniProt:C6T1E4 |
| EnsemblPlantsGene:GLYMA_10G067800 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0006414 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0022625 | GO:GO:0030529 | InterPro:IPR038716 | EnsemblPlants:KRH32679 | ProteinID:KRH32679 | ProteinID:KRH32679.1 |
| HAMAP:MF_01478 | InterPro:P1/P2_N_sf | PFAM:PF00428 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF72 | InterPro:Ribosomal_L12 |
| UniParc:UPI0001B15890 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:6668829..6670430
Molecular Weight (calculated)
11434.4 Da
IEP (calculated)
4.005
GRAVY (calculated)
-0.054
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVVAAYLLA VLGGNNTPSA DDIKEILGSV GIEADEDRIE SFLSEVKGKD IVELIAAGKE KLASVPSGGG GAVAVAAAPG GGGGGAAPAA EVKKEEKVEE
101: KEESDDDMGF SLFD
101: KEESDDDMGF SLFD
001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E
101: SDDDMGFSLF E
Arabidopsis Description
RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.