CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 24385303
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96175	Soybean	extracellular	95.58	95.58
KRH32679	Soybean	endoplasmic reticulum	81.42	80.7
KRH30835	Soybean	endoplasmic reticulum	78.76	78.07
KRH26594	Soybean	endoplasmic reticulum	70.8	72.07
KRH22710	Soybean	endoplasmic reticulum	69.03	52.35

Protein Annotations

Gene3D:1.10.10.1410	EntrezGene:100817491	MapMan:17.1.2.1.47	EMBL:ACUP02002086	EnsemblPlantsGene:GLYMA_03G193100	GO:GO:0002181
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
UniProt:I1JPZ4	InterPro:IPR038716	EnsemblPlants:KRH67884	ProteinID:KRH67884	ProteinID:KRH67884.1	HAMAP:MF_01478
InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF72	InterPro:Ribosomal_L12	SignalP:SignalP-noTM
UniParc:UPI0002339606	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:40404411..40406795

Molecular Weight (calculated)

11304.1 Da

IEP (calculated)

3.978

GRAVY (calculated)

-0.050

Length

113 amino acids

Sequence
(BLAST)

001: MKVIAAYLLA VLGGNAAPSA DDLRDILGSV GADANDDNIS NFLSEVKGKD IVELIASGRE KLASVPSGGG AAVAVAAAPG GGPAAPAAAE SKKEEKVEEK
101: EESDDDMGFS LFD

Best Arabidopsis Sequence Match ( AT3G44590.2 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.