CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32679	Soybean	endoplasmic reticulum	92.11	92.11
KRH67884	Soybean	endoplasmic reticulum	78.07	78.76
KRG96175	Soybean	extracellular	78.07	78.76
Solyc11g067100.1.1	Tomato	nucleus	78.07	78.76
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	77.19	77.19
PGSC0003DMT400030564	Potato	extracellular	73.68	75.68
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	75.44	74.14
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.81	72.17
KRH26594	Soybean	endoplasmic reticulum	70.18	72.07
EES13065	Sorghum	extracellular	66.67	67.86
Zm00001d026578_P002	Maize	plastid	65.79	67.57
Zm00001d001899_P001	Maize	plasma membrane	66.67	67.26
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.91	66.07
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.04	64.6
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.04	64.6
TraesCS2D01G291600.1	Wheat	unclear	64.04	64.6
VIT_10s0042g01190.t01	Wine grape	extracellular	64.04	64.6
OQU78483	Sorghum	endoplasmic reticulum, extracellular	66.67	63.33
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.67	63.33
Os01t0191100-01	Rice	extracellular	63.16	63.16
VIT_06s0061g01600.t01	Wine grape	cytosol	79.82	62.76
GSMUA_Achr10P...	Banana	plasma membrane	63.16	62.07
PGSC0003DMT400029096	Potato	cytosol	60.53	61.61
GSMUA_Achr6P07520_001	Banana	cytosol	50.0	60.64
AT5G40040.1	Thale cress	cytosol	59.65	59.65
CDY00130	Canola	cytosol	57.89	58.41
Bra039054.1-P	Field mustard	cytosol	57.02	57.52
VIT_18s0076g00370.t01	Wine grape	cytosol	49.12	56.57
CDY04023	Canola	cytosol	55.26	55.75
CDX86428	Canola	cytosol	55.26	55.75
Bra025339.1-P	Field mustard	cytosol	55.26	55.75
CDX85202	Canola	extracellular	54.39	54.87
Solyc06g074430.2.1	Tomato	nucleus, unclear	73.68	54.19
KRH22710	Soybean	endoplasmic reticulum	70.18	53.69
AT3G28500.1	Thale cress	cytosol	53.51	53.04
CDY47246	Canola	extracellular	51.75	51.75
Bra033049.1-P	Field mustard	cytosol	50.88	50.88
Solyc07g007880.1.1	Tomato	cytosol	48.25	49.11
PGSC0003DMT400085198	Potato	cytosol, plastid	49.12	47.46
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.21	34.21
Zm00001d009652_P003	Maize	mitochondrion	65.79	29.64
Zm00001d009657_P001	Maize	cytosol, mitochondrion	67.54	27.4

Protein Annotations

Gene3D:1.10.10.1410	EntrezGene:100499761	MapMan:17.1.2.1.47	EMBL:ACUP02007081	EMBL:BT089452	UniProt:C6SWA9
EnsemblPlantsGene:GLYMA_11G209200	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0006414	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	GO:GO:0030529	InterPro:IPR038716	EnsemblPlants:KRH30835	ProteinID:KRH30835	ProteinID:KRH30835.1
HAMAP:MF_01478	InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF72	InterPro:Ribosomal_L12
UniParc:UPI0001B14E1A	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:30063770..30065301

Molecular Weight (calculated)

11446.4 Da

IEP (calculated)

4.048

GRAVY (calculated)

0.042

Length

114 amino acids

Sequence
(BLAST)

001: MKVVAAYLLA VLGGNNSPSA DVIKEILGSV GVEADEDRIE SFLSEVKGKD IVELIAAGRE KLATVPSGGG GAVAVAAAPG GGAAAAAPAA EAKKEEKVEE
101: KEESDDDMGF SLFD

Best Arabidopsis Sequence Match ( AT3G44590.2 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.