CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039054.1-P	Field mustard	cytosol	95.58	95.58
CDX86428	Canola	cytosol	89.38	89.38
CDX85202	Canola	extracellular	86.73	86.73
CDY04023	Canola	cytosol	84.96	84.96
CDY47246	Canola	extracellular	74.34	73.68
AT3G28500.1	Thale cress	cytosol	69.91	68.7
KRH30835	Soybean	endoplasmic reticulum	58.41	57.89
Solyc11g067100.1.1	Tomato	nucleus	57.52	57.52
PGSC0003DMT400030564	Potato	extracellular	55.75	56.76
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.52	56.52
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.64	56.14
KRH32679	Soybean	endoplasmic reticulum	56.64	56.14
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.87	54.87
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.87	54.87
TraesCS2D01G291600.1	Wheat	unclear	54.87	54.87
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.75	54.31
EES13065	Sorghum	extracellular	51.33	51.79
GSMUA_Achr10P...	Banana	plasma membrane	53.1	51.72
VIT_10s0042g01190.t01	Wine grape	extracellular	51.33	51.33
CDY04508	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	51.33	51.33
GSMUA_Achr6P07520_001	Banana	cytosol	42.48	51.06
PGSC0003DMT400029096	Potato	cytosol	50.44	50.89
CDX83277	Canola	extracellular	51.33	50.88
CDY31188	Canola	extracellular	51.33	50.88
Zm00001d026578_P002	Maize	plastid	49.56	50.45
Zm00001d001899_P001	Maize	plasma membrane	50.44	50.44
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.56	50.0
CDY30535	Canola	extracellular	49.56	49.56
CDX77131	Canola	extracellular	49.56	49.56
CDX71430	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.56	49.12
Os01t0191100-01	Rice	extracellular	48.67	48.25
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.44	47.5
OQU78483	Sorghum	endoplasmic reticulum, extracellular	49.56	46.67
Solyc07g007880.1.1	Tomato	cytosol	45.13	45.54
VIT_06s0061g01600.t01	Wine grape	cytosol	57.52	44.83
VIT_18s0076g00370.t01	Wine grape	cytosol	38.05	43.43
PGSC0003DMT400085198	Potato	cytosol, plastid	43.36	41.53
Solyc06g074430.2.1	Tomato	nucleus, unclear	56.64	41.29
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.86	31.58
Zm00001d009652_P003	Maize	mitochondrion	49.56	22.13
Zm00001d009657_P001	Maize	cytosol, mitochondrion	51.33	20.64

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	GO:A0A078EDG4	EnsemblPlants:CDY00130	ProteinID:CDY00130	ProteinID:CDY00130.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00109637001	InterPro:IPR038716	HAMAP:MF_01478
InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF75	InterPro:Ribosomal_L12	UniParc:UPI0004EF3DF7
SEG:seg	:	:	:	:	:

Description

BnaC09g01710D

Coordinates

chrLK031916:-:945496..945837

Molecular Weight (calculated)

11783.8 Da

IEP (calculated)

4.079

GRAVY (calculated)

-0.178

Length

113 amino acids

Sequence
(BLAST)

001: MKVTAAFLLA KLGGNESPTK DDLKSIFESV GAEFDEVKTD LFFSLVKDHD LTELIAAGRE KMAALSSGGP AVAMVAGAGG NAPSAAEPVA ESKKVEEEKE
101: ESDDGEGMMS LFD

Best Arabidopsis Sequence Match ( AT3G28500.1 )
(BLAST)

001: MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
101: KDESSDDAGM MGLFD

Arabidopsis Description

RPP2C60S acidic ribosomal protein P2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.