Factsheet for Zm00001d001899_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

plastid: 22065420
plasma membrane: 23353019

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13065	Sorghum	extracellular	93.81	94.64
Zm00001d026578_P002	Maize	plastid	92.92	94.59
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	94.69	89.17
Os01t0191100-01	Rice	extracellular	82.3	81.58
TraesCS2D01G291600.1	Wheat	unclear	81.42	81.42
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.42	81.42
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.42	81.42
GSMUA_Achr10P...	Banana	plasma membrane	72.57	70.69
GSMUA_Achr6P07520_001	Banana	cytosol	57.52	69.15
Solyc11g067100.1.1	Tomato	nucleus	68.14	68.14
KRH30835	Soybean	endoplasmic reticulum	67.26	66.67
KRH32679	Soybean	endoplasmic reticulum	67.26	66.67
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.37	65.79
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.37	64.66
PGSC0003DMT400030564	Potato	extracellular	62.83	63.96
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.83	61.74
PGSC0003DMT400029096	Potato	cytosol	59.29	59.82
VIT_10s0042g01190.t01	Wine grape	extracellular	58.41	58.41
AT5G40040.1	Thale cress	cytosol	53.98	53.51
VIT_18s0076g00370.t01	Wine grape	cytosol	45.13	51.52
VIT_06s0061g01600.t01	Wine grape	cytosol	65.49	51.03
CDY00130	Canola	cytosol	50.44	50.44
Bra039054.1-P	Field mustard	cytosol	50.44	50.44
Solyc06g074430.2.1	Tomato	nucleus, unclear	68.14	49.68
CDY04023	Canola	cytosol	49.56	49.56
CDX86428	Canola	cytosol	49.56	49.56
Bra025339.1-P	Field mustard	cytosol	49.56	49.56
Solyc07g007880.1.1	Tomato	cytosol	48.67	49.11
AT3G28500.1	Thale cress	cytosol	49.56	48.7
CDX85202	Canola	extracellular	48.67	48.67
PGSC0003DMT400085198	Potato	cytosol, plastid	47.79	45.76
Bra033049.1-P	Field mustard	cytosol	46.02	45.61
CDY47246	Canola	extracellular	46.02	45.61
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.13	44.74
Zm00001d010128_P003	Maize	cytosol	62.83	43.03
Zm00001d009652_P003	Maize	mitochondrion	90.27	40.32
Zm00001d009657_P001	Maize	cytosol, mitochondrion	92.92	37.37

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	EntrezGene:542338	UniProt:B6SIT5	EMBL:BT068237	EMBL:EU952650
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR038716	HAMAP:MF_01478
ProteinID:ONM12351.1	InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF76	InterPro:Ribosomal_L12
SignalP:SignalP-noTM	UniParc:UPI000182ACE6	EnsemblPlantsGene:Zm00001d001899	EnsemblPlants:Zm00001d001899_P001	EnsemblPlants:Zm00001d001899_T001	SEG:seg

Description

acidic ribosomal protein P2a-3 acidic ribosomal protein P2a-3

Coordinates

chr2:+:2559817..2561845

Molecular Weight (calculated)

11468.5 Da

IEP (calculated)

3.934

GRAVY (calculated)

0.029

Length

113 amino acids

Sequence
(BLAST)

001: MKFVAAYLLA VLAGNSSPSA EDLTAILESV GCEVDNEKME LLLSQLSGKD ITELIAAGRE KFASVPCGGG GGMAVAAAGP AAGGAAPAAE AKKEEKVEEK
101: EESDDDMGFS LFD

Best Arabidopsis Sequence Match ( AT3G44590.1 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.