Factsheet for Solyc07g007880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085198	Potato	cytosol, plastid	75.89	72.03
Solyc11g067100.1.1	Tomato	nucleus	60.71	60.18
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.14	56.14
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.46	53.04
KRH32679	Soybean	endoplasmic reticulum	51.79	50.88
EES13065	Sorghum	extracellular	49.11	49.11
Zm00001d001899_P001	Maize	plasma membrane	49.11	48.67
KRH30835	Soybean	endoplasmic reticulum	49.11	48.25
VIT_10s0042g01190.t01	Wine grape	extracellular	48.21	47.79
Zm00001d026578_P002	Maize	plastid	47.32	47.75
AT3G28500.1	Thale cress	cytosol	48.21	46.96
GSMUA_Achr10P...	Banana	plasma membrane	48.21	46.55
AT5G40040.1	Thale cress	cytosol	47.32	46.49
EES12108	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.43	46.43
Os01t0191100-01	Rice	extracellular	46.43	45.61
Bra039054.1-P	Field mustard	cytosol	45.54	45.13
CDY00130	Canola	cytosol	45.54	45.13
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.54	45.13
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.54	45.13
TraesCS2D01G291600.1	Wheat	unclear	45.54	45.13
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.21	45.0
OQU78483	Sorghum	endoplasmic reticulum, extracellular	48.21	45.0
Solyc06g074430.2.1	Tomato	nucleus, unclear	60.71	43.87
VIT_06s0061g01600.t01	Wine grape	cytosol	55.36	42.76
GSMUA_Achr6P07520_001	Banana	cytosol	35.71	42.55
Bra025339.1-P	Field mustard	cytosol	42.86	42.48
CDX86428	Canola	cytosol	42.86	42.48
CDY04023	Canola	cytosol	42.86	42.48
CDX85202	Canola	extracellular	41.96	41.59
Bra033049.1-P	Field mustard	cytosol	39.29	38.6
CDY47246	Canola	extracellular	39.29	38.6
VIT_18s0076g00370.t01	Wine grape	cytosol	33.93	38.38
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	36.61	35.96
Zm00001d009652_P003	Maize	mitochondrion	46.43	20.55
Zm00001d009657_P001	Maize	cytosol, mitochondrion	47.32	18.86

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0006414	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR038716	UniProt:K4CBQ7	HAMAP:MF_01478
InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF75	InterPro:Ribosomal_L12	EnsemblPlantsGene:Solyc07g007880.1
EnsemblPlants:Solyc07g007880.1.1	UniParc:UPI000276B000	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:2554381..2554719

Molecular Weight (calculated)

12364.4 Da

IEP (calculated)

4.178

GRAVY (calculated)

-0.506

Length

112 amino acids

Sequence
(BLAST)

001: MKVIAAYLMA QLGGNSNPSA NDLKKILNSV GAEIDDVKIE LLLSQVEGRD INELIAAGKE KLASTTCMSF GYTNNNNNNN NASSVVEEKR EEKKVEKVEE
101: CDEEDFNFSL FD

Best Arabidopsis Sequence Match ( AT3G28500.1 )
(BLAST)

001: MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
101: KDESSDDAGM MGLFD

Arabidopsis Description

RPP2C60S acidic ribosomal protein P2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.