Factsheet for Zm00001d026578_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001899_P001	Maize	plasma membrane	94.59	92.92
OQU78483	Sorghum	endoplasmic reticulum, extracellular	93.69	86.67
Zm00001d009653_P008	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	92.79	85.83
Os01t0191100-01	Rice	extracellular	86.49	84.21
TraesCS2D01G291600.1	Wheat	unclear	81.98	80.53
TraesCS2B01G310300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.98	80.53
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.98	80.53
GSMUA_Achr10P...	Banana	plasma membrane	71.17	68.1
GSMUA_Achr6P07520_001	Banana	cytosol	56.76	67.02
Solyc11g067100.1.1	Tomato	nucleus	67.57	66.37
KRH30835	Soybean	endoplasmic reticulum	67.57	65.79
PGSC0003DMT400030564	Potato	extracellular	64.86	64.86
VIT_08s0007g03620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.77	64.04
KRH32679	Soybean	endoplasmic reticulum	65.77	64.04
PGSC0003DMT400019150	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.86	62.07
VIT_13s0074g00750.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.06	60.87
VIT_10s0042g01190.t01	Wine grape	extracellular	59.46	58.41
PGSC0003DMT400029096	Potato	cytosol	58.56	58.04
AT5G40040.1	Thale cress	cytosol	52.25	50.88
VIT_18s0076g00370.t01	Wine grape	cytosol	45.05	50.51
VIT_06s0061g01600.t01	Wine grape	cytosol	64.86	49.66
CDY00130	Canola	cytosol	50.45	49.56
Bra039054.1-P	Field mustard	cytosol	50.45	49.56
AT3G28500.1	Thale cress	cytosol	50.45	48.7
CDY04023	Canola	cytosol	49.55	48.67
CDX86428	Canola	cytosol	49.55	48.67
Bra025339.1-P	Field mustard	cytosol	49.55	48.67
CDX85202	Canola	extracellular	48.65	47.79
Solyc06g074430.2.1	Tomato	nucleus, unclear	66.67	47.74
Solyc07g007880.1.1	Tomato	cytosol	47.75	47.32
CDY47246	Canola	extracellular	47.75	46.49
Bra033049.1-P	Field mustard	cytosol	47.75	46.49
PGSC0003DMT400085198	Potato	cytosol, plastid	48.65	45.76
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.95	44.74
Zm00001d010128_P003	Maize	cytosol	63.96	43.03
Zm00001d009652_P003	Maize	mitochondrion	88.29	38.74
Zm00001d009657_P001	Maize	cytosol, mitochondrion	90.99	35.94

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	EntrezGene:542551	ProteinID:AQK47114.1	ProteinID:AQK47115.1	UniProt:B4FVI4
EMBL:BT041122	EMBL:EU958800	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
InterPro:IPR038716	HAMAP:MF_01478	InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF76
InterPro:Ribosomal_L12	SignalP:SignalP-noTM	UniParc:UPI00017B79EE	EnsemblPlantsGene:Zm00001d026578	EnsemblPlants:Zm00001d026578_P002	EnsemblPlants:Zm00001d026578_T002
SEG:seg	:	:	:	:	:

Description

60S acidic ribosomal protein P2-5

Coordinates

chr10:-:148267758..148269932

Molecular Weight (calculated)

11350.4 Da

IEP (calculated)

3.934

GRAVY (calculated)

0.079

Length

111 amino acids

Sequence
(BLAST)

001: MKFVAAYLLA VLAGNSSPSA EDLTAILESV GCEVDNEKME LLLSQLSGKD ITELIAAGRE KFASVPCGGG GVAVVAAAPA AGGAPAAEAK KEEKVEEKEE
101: SDDDMGFSLF D

Best Arabidopsis Sequence Match ( AT3G44590.2 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.