Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d044774_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44590.1 | Zm00001d044774_P004 | AT1G10510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G073640.1 | Barley | cytosol | 52.12 | 76.11 |
| TraesCS1A01G277500.1 | Wheat | nucleus | 51.52 | 75.22 |
| TraesCS1D01G276700.1 | Wheat | extracellular | 50.3 | 74.11 |
| TraesCS1B01G286500.1 | Wheat | extracellular | 49.7 | 73.21 |
| KXG22113 | Sorghum | endoplasmic reticulum, extracellular, plastid | 61.82 | 70.34 |
| Zm00001d026578_P002 | Maize | plastid | 43.03 | 63.96 |
| Zm00001d001899_P001 | Maize | plasma membrane | 43.03 | 62.83 |
| Os05t0445500-01 | Rice | nucleus | 52.12 | 61.87 |
| Zm00001d009653_P008 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 44.24 | 60.83 |
| KRH26594 | Soybean | endoplasmic reticulum | 37.58 | 55.86 |
| AT3G44590.1 | Thale cress | extracellular | 37.58 | 55.86 |
| CDY31188 | Canola | extracellular | 38.18 | 55.26 |
| CDY04508 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 37.58 | 54.87 |
| CDX83277 | Canola | extracellular | 37.58 | 54.39 |
| Bra000501.1-P | Field mustard | extracellular | 37.58 | 54.39 |
| Bra012004.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 36.97 | 53.98 |
| CDY30535 | Canola | extracellular | 36.36 | 53.1 |
| Bra034363.1-P | Field mustard | extracellular | 36.36 | 53.1 |
| AT2G27710.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 36.97 | 53.04 |
| CDX77131 | Canola | extracellular | 35.76 | 52.21 |
| CDX71430 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 35.15 | 50.88 |
| AT2G27720.2 | Thale cress | extracellular | 36.36 | 46.15 |
| KRH22710 | Soybean | endoplasmic reticulum | 39.39 | 43.62 |
| Zm00001d009652_P003 | Maize | mitochondrion | 40.0 | 26.09 |
| Zm00001d009657_P001 | Maize | cytosol, mitochondrion | 44.24 | 25.98 |
Protein Annotations
| Gene3D:1.10.10.1410 | MapMan:17.1.2.1.47 | EntrezGene:542340 | UniProt:A0A1D6FPC0 | ProteinID:AQK93473.1 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR038716 | HAMAP:MF_01478 | InterPro:P1/P2_N_sf |
| PFAM:PF00428 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF76 | InterPro:Ribosomal_L12 | UniParc:UPI0008450BBA | EnsemblPlantsGene:Zm00001d010128 |
| EnsemblPlants:Zm00001d010128_P003 | EnsemblPlants:Zm00001d010128_T003 | SEG:seg | : | : | : |
Description
acidic ribosomal protein P2b (rpp2b) acidic ribosomal protein P2b (rpp2b)
Coordinates
chr8:-:100554189..100558541
Molecular Weight (calculated)
17509.9 Da
IEP (calculated)
4.577
GRAVY (calculated)
-0.125
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MLIRVHLFVF KDKDVIGISA VSRMKVIAAY LLAVLGGNTS PTADDVKSIL ESVGAEADEE KLEFLLTELK DKDITEVIAA GRERLSSVPS GGGAIDMGAP
101: AAVAGGGAAP AEEAKKEEKN LRIRKSNFGQ KTGIENFGTK LKSLTTYEEG DTTLEGQDMG FSLFD
101: AAVAGGGAAP AEEAKKEEKN LRIRKSNFGQ KTGIENFGTK LKSLTTYEEG DTTLEGQDMG FSLFD
1: MKVVAAYLLA VLSGKASPTS ADIKTILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG ASAAESKKEE KKEEKEESDD DMGFSLFE
Arabidopsis Description
RPP2BAT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.